Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04739 ATGGAATTCAACTCTTTTTCATGGGCAATCAATTCCATTGAATACCCAACCGTACCACAAGACTTCTATTTTTCTGATTTCTTCTCCATCATGTTCAGTCTCACCAAAGAATTGATCCAAATTACCCCGTCCACAAACCAAACCTCTGAGTTTGACTTTTCTTCTTCTGCAACTACTACTCTCAATGAAGCGTTCTTGGTTCCCTTCGATGTCCTGCGTAACGGAGAAGACACCGCATTCTTACATGAAATCTTCTCTTCAATGCCTATATCTCCTCAGATATTGGACCAAATTTTACCTGTCATGGGCAGAACCGCAAGAACAATTCTAAGCCGTGAAGGGTGTGACTCCAGCATGCCAGAGATTGTTGTGAACCTTTATGTTAGGACGCACATTGTTGTCCAAGATTCTGATTTAGTCCGACTTGTGAATCTGTTGGAAAGACCTAAAATTGATGAGCAAGATGATGATGCTGAACAATGCAGTATTTGCTTGGAAGAGTTTAGACATGGTATCGAAGATTCAAGTGTAGAAGTTGTTCGCACAAATTGCTCGCATGTGTTCCATGAACGCTGCATGTTCCGTTGGCTGCGGCATTGTGCCGACCATCAATCACCCTATTCTTGCCCATTGTGCCGCTGCATTATATTTCCAACTTCACAGAGAGATTAA 672 0.4226 MEFNSFSWAINSIEYPTVPQDFYFSDFFSIMFSLTKELIQITPSTNQTSEFDFSSSATTTLNEAFLVPFDVLRNGEDTAFLHEIFSSMPISPQILDQILPVMGRTARTILSREGCDSSMPEIVVNLYVRTHIVVQDSDLVRLVNLLERPKIDEQDDDAEQCSICLEEFRHGIEDSSVEVVRTNCSHVFHERCMFRWLRHCADHQSPYSCPLCRCIIFPTSQRD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04739 223 Pfam Ring finger domain 160 213 IPR001841 -
Aip03g04739 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 217 IPR013083 -
Aip03g04739 223 SUPERFAMILY RING/U-box 150 218 - -
Aip03g04739 223 SMART ring_2 161 212 IPR001841 -
Aip03g04739 223 CDD RING-H2 161 213 - -
Aip03g04739 223 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 135 214 - -
Aip03g04739 223 ProSiteProfiles Zinc finger RING-type profile. 161 213 IPR001841 -
Aip03g04739 223 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 135 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04739 Aip-Chr3 131568125 131568796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04739 121 223 C3H Transcription Factor Family AT3G58720 30.435 5.09e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04739 - - adu:110273516 334.724