Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04736 ATGGCGGGAAGGGCTAAACGGAAAACCTCTGCTTCTGCGTCACCCTCTTCTTCTGTTCCTTCCCGCAAACTAGTGTTGAACATCAAAACAAGCAGGGGGATGAAGAGATCACTGCGGCAGGCTAATTCGAGAAAGAAACCCAAAGCAAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCCGATGTCAAGTCAATGCGAGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACGATGACTTATGAGGTTAGGACTTAG 321 0.4517 MAGRAKRKTSASASPSSSVPSRKLVLNIKTSRGMKRSLRQANSRKKPKAKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEVRT 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04736 106 Gene3D High mobility group box domain 41 106 IPR036910 -
Aip03g04736 106 CDD HMGB-UBF_HMG-box 58 105 - -
Aip03g04736 106 MobiDBLite consensus disorder prediction 38 55 - -
Aip03g04736 106 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 6 103 - -
Aip03g04736 106 MobiDBLite consensus disorder prediction 9 25 - -
Aip03g04736 106 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 6 103 - -
Aip03g04736 106 MobiDBLite consensus disorder prediction 1 60 - -
Aip03g04736 106 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 106 IPR009071 -
Aip03g04736 106 Pfam HMG (high mobility group) box 58 105 IPR009071 -
Aip03g04736 106 SMART hmgende2 57 104 IPR009071 -
Aip03g04736 106 SUPERFAMILY HMG-box 44 105 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04736 Aip-Chr3 131545957 131548784 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aip03g04736 HMG_box 1.5e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04736 - - gmx:100809401 128.257