Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip03g04734 | ATGGACTTGAACGAAGAAGTCAGGGCAGCTCACAAGCGAGAATTCGCCGATTTCTTGGACCAAGATGTAGGGAAGGGAATTTACATGGACGAGATCAAAGCGCTCATCAATCACAAGCGCCGCCGCCTCATCGTCAACATCTCCGATCTTCACAGCTTCCGCGACTTGGGTAACAGGATTCTGAGGAATCCGAGCGAGTATATGCAAGCTTTCTGTGATGCGGTGACTGATGCTGCTCGTGCTATTGATCCCAAGTATTTAAAGGAAGGGGAACAGGTGCTTGTGGGTTTTGAAGGACCTTTCGTTTCTCGCCGAGTCACGCCAAGAGAGCTTCTCTCTGAATTCATTGGTTCTATGGTCTGTGTTGAGGGTATTGTCACCAAATGTTCGCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACTAGACAATTCACCAGTCGAGAATATCGTGATATTACATCCAACATGGGCTTGCCCACAGGGTCTGTTTATCCTACAAGGGATGAAAGAGGCAACTTGCTGGTGACTGAGTACGGGTTGTGCAAGTACAAAGATCACCAAACCTTGTCCATCCAAGAAGTTCCTGAGAACTCTGCTCCTGGTCAGCTCCCAAGGACCGTGGATGTCATAGCAGAGGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTGTTGTAGGGATATATAAGGCTCTTCCAGGTAAAACCAAAGGAAGCGTAAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTGTCTCTTCTCAACAAAGAGGCTAATGCGCCAATCTACAGTCCTGAAGACCTGAAAAACATAAAGAAGATAGCTGAAAGAGATGATGCATTTGACCTACTTGGTAATTCACTTGCACCTTCTATATATGGGCATTCATGGATTAAGAAGGCTGTGATTTTGTTAATGCTCAGTGGAGTTGAAAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTCGGTGATCCCTCTGTCGCCAAGTCCCAACTCCTAAGAGCAATTATGAATATTGCTCCTTTGGCCATATCAACTACGGGTAGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCTGTTACTTCAGATCAAGAAACAGGTAAAGATCCTTCAATACTAATTTCCATATGGAACATATATTATTACGTTTGCAATGCAAATTATAGTTACTTTTCACCAGGGGAAAGACGCCTGGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCCATACATGAAGTTATGGAACAACAGACTGTGACTATTGCAAAAGCTGGCATTCATGCATCACTTAATGCACGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAAGTTATGATCGATCACTTACTCCGACAAAAAATATTGGACTTCCAGACTCCTTACTTTCTCGGTTTGATTTACTGTTTATTGTGTTGGATCAAATGGATCCCGATATTGATCGTCATATATCGGAGCATGTCTTGCGTATGCATCGATTTCGACCTGCTACTGATGGAGCAGGTGGGGCAGCACTTGATGGGAGCTCAAGGTATGGAAGAGAAGACGAAGCAGAGACTGAATCGTCTGTGTTTGTAAAATATAACAGAATGCTGCATGGAAAGAAGACTGAAAGGGGTCGCAAACGTGATACTCTCACGATAAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGAACTTTCTGATGAGGCTTCTGAGCAAATTGCCACAGCATATGCTGAGCTCAGAAGTGCCAACTCAAATGCAAAGACTGGAGGAACACTTCCTATAACTGCCAGAACGCTAGAAACTATAATACGTCTCTCAACGGCTCATGCCAAATTGAAGTTGAGCCGGCAGGTTTCAAAGTCTGATGTTGATGCTGCTCTGAAGGTTCTTAATTTTGCAATATATCACAAAGAATTAACAGAAATGGAGGAGCGTGAGCTAGAGAGGGAAAAAGAACTTGAGAGAAAGCGTAAGGCGGAACATGATGCTGGTGGAGATGATGGTGCTGATCATGGTCCAAGAACTCGAAGAAGGTCAACGTCAGATGCCATGGAAGTAGATGATGATACACCAGCTGCTCAATCTGCAGCCAGTCTCACTCCTGAAAGAATCGAAGCGTTTAATTCTCTGTTTGGTCAGCACATGCGTGGCAATCGCCTGGATGTTATATCCATTGCAGATTTAGAGACTGTTATCAAAGGAGCTGATTCCAGTTACAGCTCCCAAGATATATTGGACCTACTAAAGAAATTGGAAGATGACAATAGAGTGATGATAGCTGATGGAAGGGGAGAAGAATTTGATGTTCGCATCCTCTGCAGTCGACATGATGGAAGGGATTTTCATTCTCCAGAGTTTGTCCATCTTCCTTTCATTCATAGTAACATTCAACCAAAGGAAAAAACAAATGCAGTGGAGCTTGTAGGAGTCAGAATTTTATGGGATCCAACGAATCATTACATGGATTGGGATAGAGTAGTGACGGACAAGATCCTGCATACAGCTTGCGCGGTGTGTTTAGTCTAG | 2634 | 0.4393 | MDLNEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRRRLIVNISDLHSFRDLGNRILRNPSEYMQAFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTRQFTSREYRDITSNMGLPTGSVYPTRDERGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAVVGIYKALPGKTKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDAFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGKDPSILISIWNIYYYVCNANYSYFSPGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRPATDGAGGAALDGSSRYGREDEAETESSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELSDEASEQIATAYAELRSANSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRQVSKSDVDAALKVLNFAIYHKELTEMEERELEREKELERKRKAEHDAGGDDGADHGPRTRRRSTSDAMEVDDDTPAAQSAASLTPERIEAFNSLFGQHMRGNRLDVISIADLETVIKGADSSYSSQDILDLLKKLEDDNRVMIADGRGEEFDVRILCSRHDGRDFHSPEFVHLPFIHSNIQPKEKTNAVELVGVRILWDPTNHYMDWDRVVTDKILHTACAVCLV | 877 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip03g04734 | 877 | Coils | Coil | 601 | 621 | - | - | |
| Aip03g04734 | 877 | Gene3D | - | 3 | 99 | - | - | |
| Aip03g04734 | 877 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 299 | 680 | IPR027417 | - | |
| Aip03g04734 | 877 | ProSitePatterns | MCM family signature. | 425 | 433 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aip03g04734 | 877 | MobiDBLite | consensus disorder prediction | 679 | 721 | - | - | |
| Aip03g04734 | 877 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 3 | 384 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | Gene3D | - | 109 | 239 | IPR012340 | - | |
| Aip03g04734 | 877 | MobiDBLite | consensus disorder prediction | 679 | 735 | - | - | |
| Aip03g04734 | 877 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 408 | 796 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | PANTHER | DNA HELICASE | 408 | 796 | - | - | |
| Aip03g04734 | 877 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 259 | IPR012340 | - | |
| Aip03g04734 | 877 | PANTHER | DNA HELICASE | 3 | 384 | - | - | |
| Aip03g04734 | 877 | Pfam | MCM AAA-lid domain | 584 | 667 | IPR041562 | - | |
| Aip03g04734 | 877 | CDD | MCM3 | 292 | 669 | - | - | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 518 | 528 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 658 | 673 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 181 | 195 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 207 | 219 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 485 | 495 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Aip03g04734 | 877 | Coils | Coil | 672 | 698 | - | - | |
| Aip03g04734 | 877 | Gene3D | - | 271 | 691 | IPR027417 | - | |
| Aip03g04734 | 877 | Pfam | MCM N-terminal domain | 12 | 84 | IPR027925 | - | |
| Aip03g04734 | 877 | Pfam | MCM P-loop domain | 277 | 384 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | Pfam | MCM P-loop domain | 411 | 526 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | ProSiteProfiles | MCM family domain profile. | 289 | 522 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | SMART | mcm | 104 | 671 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | SMART | AAA_5 | 331 | 511 | IPR003593 | - | |
| Aip03g04734 | 877 | Gene3D | - | 135 | 189 | - | - | |
| Aip03g04734 | 877 | Pfam | MCM OB domain | 109 | 239 | IPR033762 | - | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 330 | 345 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 417 | 431 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 504 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 445 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aip03g04734 | 877 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 481 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip03g04734 | Aip-Chr3 | 131520105 | 131525035 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip03g04734 | 1 | 606 | Core DNA Replication Machinery Family | AT5G46280 | 78.125 | 0.0 | 956 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip03g04734 | K02541 | - | jre:108990186 | 1270.37 |