Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04722 ATGTCTAGGAGAAAGGTTAGAGAGCCCAAGGAAGAAACTGTCACTCTTGGCCCTGCTGTTAGAGAGGGTGAACATGTTTTTGGTGTGGCTCGCATCTTTGCATCATTTAATGACACCTTTATTCATGTGACTGATTTGTCTGGAAGGGAAACCCTTGTCCGCATCACCGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCCCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCTAGATGCAAGGAGCTGGGAATAACTGCCCTTCATATCAAGCTCCGAGCCACTGGTGGAAACAAGACAAAAACACCTGGCCCTGGTGCTCAGTCTGCCCTCCGTGCCCTGGCTCGGTCTGGAATGAAAATTGGCCGTATAGAGGATGTGACCCCGATTCCTTCAGATAGCACTCGCAGAAAGAGTGGTAGAAGGGATGAAGTTGAATTTCAATTTTCTCATATTGTACTTTTTGACATTTCACTTCCACTTCGTCGGCTGCGAGGGCTTCGTCTCCATCTACAGCCCGCCACCACATCAGCACTCACCTACGTCCAATTTCCACACTCCGCCGTGATTCTTCATGCTGTTTTCACTTTCACTTCGTCGGCTGCGAGGGCTTCGTCTCCATCCACCGCCCGCCACCACATCAGCACTCATCTATGTCCAATTTCCACGCTCTGCCGCGATTCTTCCTGCTGCTCAGCACACTTTCCCTCGTCCCTCCCATCACCCTCGAGCTGGCCGTTCCTCTCAACGCCGGCGAGCTCAGTCCCTCCCTTTCGTTCCGCCGCCGGACTGCTCCTAACGCCGTCGCTGGTTGGAGCTTCGAAGCTCACTCGGTCCCTCACTCAGCTAACGTCTCAGACTCTCAGTAGTGGAAGCATAGTCACCGGGCTCGCCTCCTGCCTCCGTTGCGAAGGTTCCACCGTCGCCGGCGCCATCTCTGTTCCTGCCTCCGTCGCCATCTCTCCGTTTCCAGCGCCGTCATCCTTCCTTGCATTTGAAACTTTTACTTTCTCTTCTTTAGATTTAAAATACGGGGCATCAACAAGCACAAGAAAGAGGAAAATGTTCTTCCATATAGTTTTGGAGCGGAACATGCAGCTGCATCCCCGTTACTTTGGTCGTAACCTCCGCGACAATCTTGTTTCCAAGCTCATGAAAGATGTTGAAGGCACCTGCAGTGGTCGGCATGGCTTTGTGGTGGCTGTTACTGGGATTGAAAACATCGGCAAGGGTTTGATTAGGGATGGGACAGGATTTGTCACATTCCCTGTTAAGTACCAATGTGTTGTTTTTAGGCCATTTAAAGGGGAGATCTTAGAAGCAGTTGTTACCATGGTCAACAAGATGGGATTCTTTGCCGAAGCTGGACCCGTGCAAATTTTTGTTTCAAATCATTTGATTCCTGATGATATGGAGTTTCAGTCTGGGGATATGCCAAATTATACTACTTCAGATGGTTCTGTAAAAATTCAAAAAGATAGTGAAGTGAGATTGAAGATTATGGGAACTCGGGTGGATGCTACCGAAATTTTCTGCATTGGTACCATAAAAGATGATTTCTTGGGTGTGATCAATGATCCTGCGACAGCTTAA 1605 0.491 MSRRKVREPKEETVTLGPAVREGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRDEVEFQFSHIVLFDISLPLRRLRGLRLHLQPATTSALTYVQFPHSAVILHAVFTFTSSAARASSPSTARHHISTHLCPISTLCRDSSCCSAHFPSSLPSPSSWPFLSTPASSVPPFRSAAGLLLTPSLVGASKLTRSLTQLTSQTLSSGSIVTGLASCLRCEGSTVAGAISVPASVAISPFPAPSSFLAFETFTFSSLDLKYGASTSTRKRKMFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIMGTRVDATEIFCIGTIKDDFLGVINDPATA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04722 534 Gene3D - 439 529 IPR012340 -
Aip03g04722 534 SUPERFAMILY Nucleic acid-binding proteins 437 527 IPR012340 -
Aip03g04722 534 Gene3D Ribosomal protein S11 1 148 IPR036967 GO:0003735|GO:0005840|GO:0006412
Aip03g04722 534 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 348 534 IPR045113 GO:0006352
Aip03g04722 534 PANTHER BNAA10G12180D PROTEIN 348 534 - -
Aip03g04722 534 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 366 422 IPR005576 GO:0006351
Aip03g04722 534 Pfam S1 RNA binding domain 436 514 IPR003029 GO:0003676
Aip03g04722 534 Gene3D - 358 438 IPR036898 -
Aip03g04722 534 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
Aip03g04722 534 CDD S1_RNAPII_Rpb7 439 526 - -
Aip03g04722 534 CDD RNAP_II_Rpb7_N 360 439 - -
Aip03g04722 534 SUPERFAMILY Translational machinery components 24 146 - -
Aip03g04722 534 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 359 436 IPR036898 -
Aip03g04722 534 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aip03g04722 534 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04722 Aip-Chr3 131418288 131428771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04722 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 91.367 2.76e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04722 K03015 - gmx:547985 355.525