LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04682	ATGTCCATCAATGCTTCTCCTCTAATGGCACATTTGCTTCCATTGATGCGATTTGCGAGGCTCTTGCTAGCTGTTTTTGCTTTCAGAGTTTTCTTCATAGGGGATCTTGATAACTCTAATCTATCTGAACATTTGGCGAATTGCTTGGTGACTGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAGGACAAGAGATACAAGAACCGGGAATCGCAAACTGTGCGCCTTCTTGACCACCCTAATGTTGTGTCTTTGAAGCATTGCTTCTTCTCAACGACTGAGAAAGATGAACTCTATCTTAACTTGGTATTGGAGTATGTTCCCGAGACTGTCAATAGGATATTTAGAGCAGTTGCTTATCTTCACAACAGCATTGGAGTTTGTCACAGGGACATAAAACCTCAAAATTACTGGCACTACAGAGCTCCTGAGCTCATATTTTGGGCAACTAAATACACTACTGCCGTTGACATCTGGCAGGTGGTTGTGTACGTGGCAAACTATTACTTGAACAGCCTCTCTTTCTGGGTGAGAGTGGAGTAG	543	0.4273	MSINASPLMAHLLPLMRFARLLLAVFAFRVFFIGDLDNSNLSEHLANCLVTGETVAIKKVLQDKRYKNRESQTVRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRIFRAVAYLHNSIGVCHRDIKPQNYWHYRAPELIFWATKYTTAVDIWQVVVYVANYYLNSLSFWVRVE	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04682	180	ProSiteProfiles	Protein kinase domain profile.	25	180	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g04682	180	SUPERFAMILY	Protein kinase-like (PK-like)	45	159	IPR011009	-
	Aip03g04682	180	Pfam	Protein kinase domain	50	136	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g04682	180	Gene3D	Phosphorylase Kinase; domain 1	44	105	-	-
	Aip03g04682	180	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	138	170	-	-
	Aip03g04682	180	Gene3D	Transferase(Phosphotransferase) domain 1	139	167	-	-
	Aip03g04682	180	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	45	114	-	-
	Aip03g04682	180	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	113	136	-	-
	Aip03g04682	180	Gene3D	Transferase(Phosphotransferase) domain 1	106	137	-	-
	Aip03g04682	180	PANTHER	SHAGGY-RELATED PROTEIN KINASE EPSILON	45	114	-	-
	Aip03g04682	180	PANTHER	SHAGGY-RELATED PROTEIN KINASE EPSILON	113	136	-	-
	Aip03g04682	180	PANTHER	SHAGGY-RELATED PROTEIN KINASE EPSILON	138	170	-	-
	Aip03g04682	180	SMART	serkin_6	44	177	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04682	Aip-Chr3	131085327	131087972	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04682	51	161	MAP Kinase Gene Family	AT1G18150	27.326	1.40e-10	57.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Aip03g04682		Pkinase	3e-09	CL0016