Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04678 ATGGTGAAGATCTCGCTTGGCGGATACGACGATGGGGAAGGACCTAGCAACCGGATCCAGAAGCGACTCAGGATGGAACCAGAAGATGGCCAAGCAAGCAGAAACGAAAAGGAGGAGCATGCAGGAGATGGCGGCGAGGCTAGAAGTGCAGAGCATGATGAAAACCCTGTTGGATCTGTAAGCGACGATAAGGATAGGTCTATTTCTGTGACTATCATCGACCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTTTTCCAGTGTGAGAATGGTCATATTGCTTGCTCTAATTGCTGTGCCAGACTTGGGAACAAGTGTCCCATGTGCTCAATGCCCATTGGCTATAACCGCTGCAGAGCTATTGAGAAGGTGCTGGAATCTATTAAAATATCATGCCTGAATGCAAAATATGGTTGTAAACATATGTTTAGTTACAGTAAAAAAAATGAACACGAGAAGGAATGTAACTTTCTGCCATGTTTATGCCCGCATTCAGGTTGTGACTTTCTTGCTTCATCTGAGGAGTTATCCCTCCACTTTAGCCATAGGCATATACATTCTGGAATACAGTTTACATACGATAAATTTTTCACTGTCTTCTTAAATCTTGATCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTGTTTGTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATTGGCCCCAAATCCAAGACAGGGTTTCATTATGATATCTTGGCTAGGTCCCAGGGAACCTCTCTAATATTGCAATCTTATACCAAGATTGTTCAAGGTCACTTTGCTGATGCTCCTTCAGCAGGGATGCTTTTGATTCCTTCTGATTTTTTTGGTTCCGGACAAATCAAGCTGGATATTCGCATAAGGTCATGA 921 0.4245 MVKISLGGYDDGEGPSNRIQKRLRMEPEDGQASRNEKEEHAGDGGEARSAEHDENPVGSVSDDKDRSISVTIIDPDVLDCCICYEPLTSPVFQCENGHIACSNCCARLGNKCPMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFSYSKKNEHEKECNFLPCLCPHSGCDFLASSEELSLHFSHRHIHSGIQFTYDKFFTVFLNLDHKTIVLQEKNDANLFVIHNNHELLGNLIHITCIGPKSKTGFHYDILARSQGTSLILQSYTKIVQGHFADAPSAGMLLIPSDFFGSGQIKLDIRIRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04678 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 123 IPR013083 -
Aip03g04678 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 305 IPR044286 -
Aip03g04678 306 MobiDBLite consensus disorder prediction 15 61 - -
Aip03g04678 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 186 IPR013083 -
Aip03g04678 306 SUPERFAMILY RING/U-box 79 122 - -
Aip03g04678 306 CDD RING-HC_SIAHs 78 116 - -
Aip03g04678 306 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Aip03g04678 306 Pfam Seven in absentia protein family 123 221 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aip03g04678 306 MobiDBLite consensus disorder prediction 1 65 - -
Aip03g04678 306 SUPERFAMILY TRAF domain-like 133 305 - -
Aip03g04678 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 305 - -
Aip03g04678 306 ProSiteProfiles Zinc finger SIAH-type profile. 133 191 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04678 Aip-Chr3 131042594 131044165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04678 76 304 C3H Transcription Factor Family AT2G41980 27.755 3.37e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04678 K04506 - gmx:100797881 431.024