Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04672 ATGGCTACCATTTCTGCAACTTGCTACTTCTATATTCTATCATGGTTATGGTTATGCTCCATGACACTATGTGGAACAGTGTTAGAAGACCTAAAAAACTTGCATCCACCTCCAGAATTTAACTCCACAATCATGACAAACTGTCTCAATAACCCTTCGCTTAGGTACTGCAGTTCCTCTCCCATGAACTTTGACGAAATATTCAAATACACCATTGTTGCTAGCCATCTCTGCAATGAATCAAAGAACCCCAATTGCATAGAATCCTTCCCCAAAGTTGATCTTAGAAACCGTCCAAACATTGCACCTCTTTACTTGTCATTTGAATTCTTCTGGAGGTATTGCCCCCTAACCATAGTTTCCATTGATGTGTCAAACAACTCTTTGAAGGGGAATTTTCCTATTGATGTTCTTCATTGCACTCAAATACATGCTCTTGATTTAAGCATCAATGAGTTTTCTGGTGATATTCCAATTCAGAGTTTCACTCCTCTCACCAACCTTACTTTCCTTAACCTATCCTATAACTGCTTCTCTGAGAGTGAAGAACTATCTGATTCACAGTTCTTCAAAAGGTTTAATTCTTCAAGTTTTCTTCATTCTGGTGCACTCTTGGATCACAGAAGGTTCTTCACATTGAAGGTTGTGATCTTATTGGTTGGTTTTCCCATCCTTGTCATTCTGATGGTGATTTTCTTAGCATGGCTTTGTTTTCAAAGGCCTGATTTTCTTCCGAGAAAACTTCAAAGAAGAAGGACCTTCACACCTGCAATTCTAAACGCGGCGACATCTGGTTTTTCAAGCAAGAATTTAGTAGGGAAGAGTGATGTTGTTCACATCTACAAAGGGGTCTTGAGAGACGGCACACAAGTGAAAATTGAGATGTATTGGGATGAGATATCAAGGGAGAGATATCGTAAATTTGTTGAAGAATGCAAGGTGCTCTCTGAGTTAGACCACAAGAACCTTGTTAGGGTTCTAGGGTGGTGTAAGAGCAGAAAATTCAGGGCTGTTATCACAGAATGGACAAGAAAGGAGAATGTTGAAATGTGGTTATTATCAGAGTCTGCTCCACCACCATGGAGTCATAGAGTCAAAGTGTTAATGGGAGTTGTAGAATGCATGCAGTATCTGCAGGAGGAATGGCCTCAAGTTGACTATGTTCTCAACACAAGTAGTGTTCTATTGACTCAAGATTTGGAACCATTAATTTCAAGGTTCAAAGTTGTAGATCATAACATTAGTACTACAAGAAATATATGCAAGTTTGGTGTATTCATGCTGCAAGTGATACTAAATAGGAAGGGTCAAGAAGAGTTTGAAAGGGATGCAAGTGGGTTCATTAAGTATATGAGAAGTGTTGATCCTGAAGAGTTGCAACAGATGATTGATGAGAGAATGGAACTAGGTGAAACTAGTTTTCATCAAGTTAAACAGGCTGTATCCCTTGGATTAATGTGCATAGACCAATCAAACAGTGAGCAACCGAGCTTGGCCTTCATATCTAATAGCATTGCCAGAGCCTACAAGGCTACCCGTGTTTTGCCATCTGCAAATCATACAATAACAAGATCCCATGGAGGCCATAGATTTAAGGGACACAAGACATAA 1611 0.3954 MATISATCYFYILSWLWLCSMTLCGTVLEDLKNLHPPPEFNSTIMTNCLNNPSLRYCSSSPMNFDEIFKYTIVASHLCNESKNPNCIESFPKVDLRNRPNIAPLYLSFEFFWRYCPLTIVSIDVSNNSLKGNFPIDVLHCTQIHALDLSINEFSGDIPIQSFTPLTNLTFLNLSYNCFSESEELSDSQFFKRFNSSSFLHSGALLDHRRFFTLKVVILLVGFPILVILMVIFLAWLCFQRPDFLPRKLQRRRTFTPAILNAATSGFSSKNLVGKSDVVHIYKGVLRDGTQVKIEMYWDEISRERYRKFVEECKVLSELDHKNLVRVLGWCKSRKFRAVITEWTRKENVEMWLLSESAPPPWSHRVKVLMGVVECMQYLQEEWPQVDYVLNTSSVLLTQDLEPLISRFKVVDHNISTTRNICKFGVFMLQVILNRKGQEEFERDASGFIKYMRSVDPEELQQMIDERMELGETSFHQVKQAVSLGLMCIDQSNSEQPSLAFISNSIARAYKATRVLPSANHTITRSHGGHRFKGHKT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04672 536 Pfam Protein tyrosine and serine/threonine kinase 271 415 IPR001245 GO:0004672|GO:0006468
Aip03g04672 536 Gene3D Transferase(Phosphotransferase) domain 1 254 513 - -
Aip03g04672 536 ProSiteProfiles Protein kinase domain profile. 266 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04672 536 ProSiteProfiles Leucine-rich repeat profile. 167 188 IPR001611 GO:0005515
Aip03g04672 536 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 534 - -
Aip03g04672 536 SUPERFAMILY L domain-like 85 181 - -
Aip03g04672 536 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 534 - -
Aip03g04672 536 SUPERFAMILY Protein kinase-like (PK-like) 246 503 IPR011009 -
Aip03g04672 536 Gene3D Ribonuclease Inhibitor 68 191 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04672 Aip-Chr3 130990818 130992563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04672 122 447 Receptor kinase-like Gene Family AT2G23950 25.260 1.56e-22 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Aip03g04672 PK_Tyr_Ser-Thr 1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04672 - - ahf:112771647 1051.2