Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04625 ATGTGTCTATTGCTTCCTCCGAAATCCAATCGAGCATCATCTGCTTTGTCCAATGGGCCACCCACGGTGCCGGGGGAGCATCAAGTCCGAACAGACGAGAAAACTtggtttcatggaaGTGCAGAGCTCCACACGAGTGTTACGATCCCCTGCAACAGCTTCACCACCGCCGCTACCATGGTGAACGTTCCGAAGACAAAGAAGACGTACTGCAAGAGCAAGGAGTGCAGGAAGCACACTCTTCACAAGGTTACCCAATACAAGAAGGGCAAGGATAGCATCGCCGCTCAGGGTAAGCGCCGTTATGACCGCAAGCAATCCGGTTATGGTGGCCAGACCAAGCCCGTCTTCCACAAAAAGGCCAAGACCACCAAGAAAATTGTGTTGAGGCTTCAATGCCAGGGCTGCAAACATGTCTCCCAGCATCCTATTAAGAGATGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACTTCCCTCTTCTAA 495 0.501 MCLLLPPKSNRASSALSNGPPTVPGEHQVRTDEKTWFHGSAELHTSVTIPCNSFTTAATMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04625 164 MobiDBLite consensus disorder prediction 5 28 - -
Aip03g04625 164 ProSitePatterns Ribosomal protein L44e signature. 122 133 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aip03g04625 164 MobiDBLite consensus disorder prediction 89 107 - -
Aip03g04625 164 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 41 164 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aip03g04625 164 SUPERFAMILY Zn-binding ribosomal proteins 61 153 IPR011332 GO:0006412
Aip03g04625 164 Pfam Ribosomal protein L44 78 153 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aip03g04625 164 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 41 164 - -
Aip03g04625 164 Gene3D - 60 164 - -
Aip03g04625 164 MobiDBLite consensus disorder prediction 89 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04625 Aip-Chr3 130507964 130512492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04625 60 164 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 6.92e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04625 K02929 - tcc:18608503 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04625 03 130507964 130512492 Aip10g00851 10 10384287 10386337 PCT