Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04621 ATGGGGGATAGCAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACTCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTATTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGGTATGTAGAGTCTATGAAAGTGATGAAAATGATGATGATGGTGATGGTGATGGAACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 585 0.4137 MGDSNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYSFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVVCRVYESDENDDDGDGDGTELSCLDEVFLSLDDLDEVSLPN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04621 194 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Aip03g04621 194 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 191 - -
Aip03g04621 194 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Aip03g04621 194 PANTHER NAC TRANSCRIPTION FACTOR 56 5 191 - -
Aip03g04621 194 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Aip03g04621 194 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04621 Aip-Chr3 130460850 130461784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04621 4 159 NAC Transcription Factor Family AT1G69490 44.512 7.06e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g04621 NAM 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04621 - - gmx:100788893 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04621 03 130460850 130461784 Aip10g00849 10 10330996 10331989 PCT