Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04612 ATGAGAATGAGGTTCTTTTGGAGCTGCATGGAGCGAGTGACTTCATGGTGCTTCATGGGACAGTTTCTCATTTGTGCAATTCTGGTGCTTGACGTGATGCTGAAGGTTTCTGCTAATTCAGAAGGTGATGCCCTGAATTCTTTGAAGAACAGCTTGACAGATCCTGGTGATGTTCTTCAAAGCTGGGATTCCACTCTTGTCAATCCATGTACATGGTTTCATGTTACTTGCAGCAATGATAATAGTGTGATCCGTGTTGATCTAGGAAATGCAAACCTTTCCGGTCAACTAGTTCCGCAACTTGGTCAGCTCCCAAATTTACAGTACTTGGAACTTTATAGCAATAATATCACTGGGAAAATTCCAATTGAGCTTGGAAATTTGAAAAACTTGGTGAGCTTGGATCTGTACGTGAATAAGTTAACCGGCCCTATACCGGACTCATTGAGCAACCTTAAAAAGCTACGTTTCCTGCGTCTCAACAACAATAGTTTGTCAGGAAAAATTCCCATGTCTTTGACAAGTGTGATGTCACTGCAAGTCCTTGATCTATCAAACAACAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACTCCAATCAGTTTTAAAAATAATAACCCTGGCTTGAATGAAACAAACCCTCCATCTCCCCCCACTGCTCCACCTCCAAAAGCTTCTTCAGGTAACAGTGCCACTGGATCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCATTGCAGTTGCCTGTTTGCGAAGAAGGAAACGTGCTGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAAAAAGTTTTCGCTGCGTGAGCTGCAAGTCGCTACAGATAGCTTTAATAGCAAGAATATTCTTGGAAGAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACGCAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGTTGCATGGTTTTTGTATGACACCTACCGAACGGTTGCTTGTGTATCCTTTCATGGCAAATGGAAGTGTAGCATCTTGTTTACGAGATCGTCCAGAAACACGTCCACCACTTGACTGGAAAAAAAGGAAGAGTATAGCACTGGGGTCTGCTCGGGGACTTGCTTATTTACATGATCATTGTGATCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTGATGGATTACAGAAATACTCATGTTACCACTGCTGTACGTGGCACAATCGGGCATATAGCGCCGGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTGATAACCGGACAGAGGGCTTTTGATCTAGCGCGTCTTGCCAATGATGATGATGTCATGTTGCTTCATTGGGTTAAAGGACTTCTGAAGGACAAGAAGCTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTGGCCTTGTTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTGGTGAGCATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGGGGAGATGAACCAGCATGAATTCGATCGCATGTGCTATCATGCTGCTGATATGCTCTTAGACTCCACTTTCAATATCCCAGCAGATGAACTCTCTGGTCCTAGATGA 1878 0.4361 MRMRFFWSCMERVTSWCFMGQFLICAILVLDVMLKVSANSEGDALNSLKNSLTDPGDVLQSWDSTLVNPCTWFHVTCSNDNSVIRVDLGNANLSGQLVPQLGQLPNLQYLELYSNNITGKIPIELGNLKNLVSLDLYVNKLTGPIPDSLSNLKKLRFLRLNNNSLSGKIPMSLTSVMSLQVLDLSNNNLTGDVPINGSFSMFTPISFKNNNPGLNETNPPSPPTAPPPKASSGNSATGSIAGGVAAGAALLFAGPAIAVACLRRRKRADYFFDVPAEEDPEVHLGQLKKFSLRELQVATDSFNSKNILGRGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRPETRPPLDWKKRKSIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLHWVKGLLKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVSMLEGDGLAEKWDQWQKGEMNQHEFDRMCYHAADMLLDSTFNIPADELSGPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04612 625 SUPERFAMILY L domain-like 39 204 - -
Aip03g04612 625 Gene3D Ribonuclease Inhibitor 37 219 IPR032675 -
Aip03g04612 625 ProSiteProfiles Protein kinase domain profile. 302 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04612 625 Pfam Leucine Rich Repeat 178 192 IPR001611 GO:0005515
Aip03g04612 625 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04612 625 PANTHER BNAA08G11770D PROTEIN 23 625 IPR031048 GO:0004675|GO:0005102|GO:0006468
Aip03g04612 625 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Aip03g04612 625 MobiDBLite consensus disorder prediction 210 236 - -
Aip03g04612 625 Pfam Leucine rich repeat 105 165 IPR001611 GO:0005515
Aip03g04612 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Aip03g04612 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Aip03g04612 625 Pfam Protein kinase domain 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04612 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 625 - -
Aip03g04612 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Aip03g04612 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Aip03g04612 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04612 Aip-Chr3 130353013 130357413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04612 27 625 Receptor kinase-like Gene Family AT4G33430 74.268 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aip03g04612 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04612 K13416 - gmx:100800522 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04612 03 130353013 130357413 Aip03g04612 03 130353013 130357413 ECH
Aip03g04612 03 130353013 130357413 Aip10g00838 10 10196034 10202014 PCT