Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04607 ATGTCCTTTAATGGCTTTGGCTCGATTAATAACACGAAAGAACTTAAATGGTTGGTTCTTCGAAGAAAAAGAGAGATGGCAGCTACAACATGCTGTGCTGTGTTAAACGGGTTGGGATCTTCCTTCTTATGTGGAGGAAAGAGGAGCTATACCCTTCAGGCTGCTCCCATTGGAGGCAAATCATGGATCCCTGCTGTCAAAGCTGGTGGTAATTTCATTGACCCTGAATGGCTTGATGTCTCGCTTGCGGGTGACTACGGTTTTGATCCACTAGGCCTAGGCAAAGATCCAGCATTTCCTCAGATGGTACAGACAGAGAGGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTCCATGGTTTGTGGCTGGTTTTGGTTCTCTTTTGGGGACACAATTGCTTCTCATGGGTTGGGTTGAGAGCAAGAGATGGGTGGAAAATCAAGGATGGAGATTACATTGCACACAGAGAGAAGCTAGAGAGGCTGAAATTGGCTGAGATTAAGCATGCTAAGATAGCTATGTTGGCTATGCTGCACAAGCGAAAACACCCCTTGGTGCCCTAG 570 0.4719 MSFNGFGSINNTKELKWLVLRRKREMAATTCCAVLNGLGSSFLCGGKRSYTLQAAPIGGKSWIPAVKAGGNFIDPEWLDVSLAGDYGFDPLGLGKDPAFPQMVQTERLSSFMGGGQWLQFHGLWLVLVLFWGHNCFSWVGLRARDGWKIKDGDYIAHREKLERLKLAEIKHAKIAMLAMLHKRKHPLVP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04607 189 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 59 103 - -
Aip03g04607 189 SUPERFAMILY Chlorophyll a-b binding protein 73 181 - -
Aip03g04607 189 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 154 180 IPR001344 GO:0009765|GO:0016020
Aip03g04607 189 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 26 59 - -
Aip03g04607 189 Gene3D Chlorophyll a/b binding protein domain 72 182 - -
Aip03g04607 189 Pfam Chlorophyll A-B binding protein 75 180 IPR022796 -
Aip03g04607 189 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 59 103 IPR001344 GO:0009765|GO:0016020
Aip03g04607 189 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 26 59 IPR001344 GO:0009765|GO:0016020
Aip03g04607 189 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 154 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04607 Aip-Chr3 130306050 130308893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04607 26 99 Chloroplast and Mitochondria Gene Families AT1G15820 57.447 8.23e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04607 K08917 - fve:101305949 124.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04607 03 130306050 130308893 Aip10g00826 10 10112341 10113851 PCT