Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04599 ATGAATTTGTTTGCACAAACAACGGCTACTGTTATCCTACCTCTTCTTCTCCTTGTCTCCCTTTTCTGTTATATCAATGTTTCTTTGGCGCAGAATTGTAAGAGTCAAATTTCACGTACTATTATAGTTGATCAATCTGGAAAGTCAAAATTTAAAACCGTTCAATCTGCAATTGATTCAATACCTGAAAATAACAACCAATGGGTGAAAATTCACATCAATGCTGGAACCTACAAAGAGAAGGTTCATATTCCATGTCAGAAGCCATGCATTTTTTTGGAAGGGGAAGGCATAGACGTTACTACTATTACATACAATGATCACCAATCAACTGATGAAAGTGCCACATTCTCTTCTTCTCCAGACAATGTCGTTGCAAGCAAGATTACATTTAAGAACTCGTTCGATGTGGGGAAAATGTTGAGTTTGCAAGAAATAAAAGATGGAAATGATGTTGTGCCAGCATTGTCAGCAAGAATATATGGAGACAAATCTGGGTTTTATGATTGTAGGGATAAATTCACGTATGGCGAAGTTAACTGTAAGGGAGCAGGGGCAAATTTGTCCAAGCGGGTCCCTTGGGAGAAGAAATTGGTTGCTACACAGCTAAACCAATTTTCAAGATCATCCTTCGTAGACCATGATAATTGGATTTTACAGCAGCAAACTTCTTTGACCATAGGGACGGTGAAGAATCCAGACAGATTATTCTTTTGTTGCCCAAACTTCAAGAGTGAAAAATGGCTTTGCAACTTCTTTGCATGGCTAGATGATTATGTATCTTCATGTGGTGAGGATGCTAACAAGGCTGTCTCATTTGGGACATCAAAGCAGAAGCAGAATCGATTGGAAGGCCATGGTTATGTGATGGATAACAAAATTAATGAGTTGGAAGAAAGATTAATTGGTTTGGAGGATCAGTTAGATTACTGCAGATTGAAAATGGGTGAAAATAGATGTATTAGGTATGAGTTTAATTTGTTAGCATTTCTGGGTGGAATTGTAATTGCAAGCTTGTTCAGAGCAAGTGTGTAG 1035 0.3797 MNLFAQTTATVILPLLLLVSLFCYINVSLAQNCKSQISRTIIVDQSGKSKFKTVQSAIDSIPENNNQWVKIHINAGTYKEKVHIPCQKPCIFLEGEGIDVTTITYNDHQSTDESATFSSSPDNVVASKITFKNSFDVGKMLSLQEIKDGNDVVPALSARIYGDKSGFYDCRDKFTYGEVNCKGAGANLSKRVPWEKKLVATQLNQFSRSSFVDHDNWILQQQTSLTIGTVKNPDRLFFCCPNFKSEKWLCNFFAWLDDYVSSCGEDANKAVSFGTSKQKQNRLEGHGYVMDNKINELEERLIGLEDQLDYCRLKMGENRCIRYEFNLLAFLGGIVIASLFRASV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04599 344 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 170 - -
Aip03g04599 344 Gene3D - 33 172 IPR012334 -
Aip03g04599 344 Gene3D - 173 230 IPR012334 -
Aip03g04599 344 SUPERFAMILY Pectin lyase-like 36 220 IPR011050 -
Aip03g04599 344 Pfam GRF zinc finger 229 258 IPR010666 GO:0008270
Aip03g04599 344 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 173 219 - -
Aip03g04599 344 Pfam Pectinesterase 41 134 IPR000070 GO:0030599|GO:0042545
Aip03g04599 344 PANTHER PECTINESTERASE 15 170 - -
Aip03g04599 344 Coils Coil 294 314 - -
Aip03g04599 344 PANTHER PECTINESTERASE 173 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04599 Aip-Chr3 130244464 130259039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04599 23 169 Carbohydrate Esterase AT2G19150 43.137 1.18e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04599 - - ahf:112735617 331.257