Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04589 ATGTTCGTTAAAGGCACAACCGCCGACGACCTCTTTCCTCTCTTTGACAAGTATGGCAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGGACTGGCGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCCGATGAGGCTCAGAAGGCCGTCGAAAGGCTTGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTCCAATTTGCAAAATATGGCCCCAATGCGGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCAAGAACAAGGCATAGGTCAAGGAGCCGCAGCCCAAGGAGAAGGTACCGTGATGATTACAGAGACAGGGATTACCGTAGGAGAAGTCGTAGCAGAAGTTATGATAAGTATGAACGTGACCGGTACCGTGGGAGGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGAGGGAGGGGGCGCTATGATGATGATGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCGGTGGATAGCCGCTCCCCTGCACATAGTCCTAGTCCTCGAAGGAGTCCTTCACCCCGCAGGAGTATGTCTCCTGAAAGGAGTGCATCCCCAAGAAGTCCTAGAGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGATCTCCCTCACCTCGCAGTGTCTCACCACGTGGTCGCCCTGATGCTTCGCGAAGCCCATCCCCTCGGAATTCAAATGGTGATGCGTAA 747 0.5207 MFVKGTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRHRSRSRSPRRRYRDDYRDRDYRRRSRSRSYDKYERDRYRGRDRDYRRRSRSRSASPDYKSRGRGRYDDDDDDRRSRSRSRSVDSRSPAHSPSPRRSPSPRRSMSPERSASPRSPRGESPDNRSRDGRSPSPRSVSPRGRPDASRSPSPRNSNGDA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04589 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 67 IPR000504 GO:0003723
Aip03g04589 248 SMART rrm1_1 2 69 IPR000504 GO:0003723
Aip03g04589 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 247 - -
Aip03g04589 248 MobiDBLite consensus disorder prediction 81 248 - -
Aip03g04589 248 MobiDBLite consensus disorder prediction 102 176 - -
Aip03g04589 248 SUPERFAMILY RNA-binding domain, RBD 5 81 IPR035979 GO:0003676
Aip03g04589 248 Gene3D - 2 83 IPR012677 -
Aip03g04589 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 73 IPR000504 GO:0003723
Aip03g04589 248 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 5 247 - -
Aip03g04589 248 MobiDBLite consensus disorder prediction 177 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04589 Aip-Chr3 130188214 130191586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04589 10 71 Eukaryotic Initiation Factors Gene Family AT3G11400 37.097 4.16e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04589 K12891 - gmx:100778928 216.468