Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04573 ATGGAAAACGACGACGTTGATATGCTCGGCGCCGAACACACCGAAGCTGACTTGGACGACATGAAGAGGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGAAGGAGATGCAAGCCAAGGTCGAGAAGGAGATGGGATCTATGCAAGATCCTGCTACTGCTGGTGCAAGTCAGAGCAATAGAGAGGAAGTAGATGCTCGGTCAGTCTTTGTAGGCAATGTGGACTATTCATGTACTCCCGAAGAAGTGCAGCAACATTTTCAATCATGTGGAACAGTAAACCGTGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCATATGTAGAGTTTCTTGAAGTTGAGGCTGTTCAAGAGGCTCTTCTGCTGAATGAATCTGAACTACATGGGCGCCAATTGAAGGTGACTGCAAAGAGGACCAACATACCAGGGATGAAGCAGTATCGACCCCGCCGTTCCAATCCTTACATGGGGTTTCGAGGCAGAGCTGCATTTGCTCCTCCATTTGCCTTTTCCCCATATGGATACGGAAAGGTTCCAAGGTTCAGGATGGCAATGCGCTACAGCCCCTATTATTAA 591 0.4839 MENDDVDMLGAEHTEADLDDMKRRLKEMEDEAAALKEMQAKVEKEMGSMQDPATAGASQSNREEVDARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRAAFAPPFAFSPYGYGKVPRFRMAMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04573 196 CDD RRM_II_PABPs 69 140 - -
Aip03g04573 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Aip03g04573 196 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 14 193 - -
Aip03g04573 196 Coils Coil 11 45 - -
Aip03g04573 196 SUPERFAMILY RNA-binding domain, RBD 56 166 IPR035979 GO:0003676
Aip03g04573 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 193 - -
Aip03g04573 196 Gene3D - 7 141 IPR012677 -
Aip03g04573 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Aip03g04573 196 MobiDBLite consensus disorder prediction 43 65 - -
Aip03g04573 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04573 Aip-Chr3 130021873 130024304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04573 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.08e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04573 K14396 - csv:101213499 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04573 03 130021873 130024304 Aip10g00793 10 9623496 9626912 PCT