Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04548 ATGGCTGACGTCAAGTGCTATGTTCCCCCTAATCAATTTAATATTGAGCAAATTCTTATAGAAGCGCAGCGTCGATGGCTGCGCCCAGCTGAAATTTGTGAAATTCTCAGTAATTATAAAATGTTCCAAATTGCTCCAGAGCCTGCACATATGCCGCCAAGTGGTTCACTTTTCCTGTTTGATCGGAAGGTGCTGAGATACTTTAGAAAGGATGGCCACAACTGGAGAAAGAAAAAGGATGGAAAAACAGTGAGGGAAGCTCATGAGAGACTTAAGGCTGGAAGTGTGGATGTGTTGCACTGCTATTATGCACACGGAGAAGAAAATGAAAATTTTCAAAGACGCACATACTGGATGCTTGATGAGGAACTCTCGCACATTGTTCTTGTCCATTATAGGGAAGTGAAGGCAACTAAGGCAAATTTTAGAGGTGCTGCCAAAGAAAATCAAGAATCTCTTCCTTATGCACAAATTGACAAACTACCAGGTTCCACAGAGAAGGAAATTTTTTTATCATGTAGTCTTCATCCACATAACTACCAGGTTCCATCACATACAATAGATACAACAAGCATGAAGAGCACTCAAGCAACAGAATATGAAGAAGCTGAGTCAGCATTGAATAATTATGCAAGTTCAGAAGACTACTCCTTCCTTGAGACACAACACCCAGTTGTTGAGAAGATTCCTGATCCTTATTGCCCGCCACAGTTCATAAATGAACAAGAGAAGTTGTGTGGCACTCCTGGGATGAATCATATCATGCTCAGTCAAGCTGGCAAAATCAAAGACATTCATAATGTTAGATTGGCATATGAACCCCCACAACACCTTGGCTTTTCAATGTGGGAATATATCTTGGAAAATAATGGGAGAAGTCAATACATGCCTCTTCAACCCGTACTCCCTGAAATCCAACCTGATAACATGGGAATCAATAGCAATCCCTCTCTAATGAGGTCAAATTTCACCACTAATATTACCAAAGTGAATGGGAAAGAAAATATGGTACAAGTTGAAGGAAATTGGCAGGTAATGAATGAGTTATATGAATTTGATCCTCAAAGATCCTTGGAACAGTGTCTTATACATCAAGATAAACCAAAGGTTCTTATGATAGATGACCCTCAAGAAAAACTATTAGATGCAAAAGAGAAGATAGAAACCAATAGAAGCCTGGATGGAATAGATGATACAAATTTAACTCTAAAGAAGGCTCTGTTAGATGGATCCCTTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAAAACTCCATCCACTTTTAGTGCTTATTGGGGTACAGTTGAAAATGAAAATGATGTGGACAATGCAACTATTCCTTCTGAAGTGCACCTGGATACCTATGCACTGGATCCATCTATTTCCCATGATCAACTTTTTACTATTATTGACTTTTCCCCAAGCTGGGCATTTGAAGGTTCAGAAACTAAGATTCTCATTTATGGACAATTCTTGAGGAGTCTACAGGAAGCTGAACAATGTAAATGGTCTTGCATGTTCGGTGAGGTAGAAGTGCCAGCTAATATCATTGACAATGGTGTTCTTTCTTGTTATACTCCTCCACATAAAACTGGGAGGATTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAATACGAGAATTTGATTTCCGAGACATTTACACTCAAGAAGTCAACAATGCAGCTGAGCAGAGAGAGAGCATTTCTGATAATTTCAGTGTGCGATTTGAAGAGCTGCTGTACATGGGGCATACCTTACCTCAAAACTTCGATCCAATCAGTGTAAGCGAGAAATCTGAACTGAGAAGTAAAATAAGTTCTTTGCTGAGGAAGGAGGAGGATGATTGGGATAAGCTGCTGAAACTTACTCTAGAGAAAGATTTTTCTCCACAAAATGTACAGGAGCATCTGCTTCAAAATCTTTTGAAAGATAAGTTACTTGGGTGGCTCCTTCAAAAAGTCATCGAAGATGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGAGTACTTCATCTTGCGGCTGCTCTTGGCTATGATTGGGCCTTACAACCCACAGTAATTGCTGGTGTAAATGTGAACTTCTGCGATGTAAATGGATGGACTGCTCTTCATTGGGCTGCATTCTGTGGCAGGGAGCTCACAGTTGCTTCCCTCATCTCTCTTGGCGCAGCACCTGGGGTGCTGACTGATCCAAGCCCAGAGCATCCTTCTGGTAGAACACCAGCTGACCTGGCTTCTGCAAACGGTCACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCAATAAGCGTGCAACTATTATCTCTTGATATGAACAGGGACACGAGAGAAAGTTCTGGATCAAAAGTAGTATACAGAGTCCAACACAATACTACTGAAGTTAATGATGATCGCCTATCATATGAACTGTCACTGAAAGATTCACTGGCAGCAGTGTGTAATGCCAGCCAGGCTGCTGCACGTATTCATGAAGTTTATAGAGTGCAATCTTTCCAAAGAAAACAACTGAAAGAATATGATGATAAATTTGGAATATCTGATGAAGATGCTCTTTCTCTTATAACTGTAAAACCACACAAGGTTGGACAACGCAATGAGCCTGTACATGCAGCTGCAATACGAATCCAGAACAAATTCCGCAGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGCCAAAGAATAGTTAAAATTCAGGCTCATGTAAGGGGGCACCAGGTTAGGAAGAACTGTGGAAAGATAATTTGGTCAGTTGGAATTTTAGAAAAAGTTATTTTGCGCTGGCGCCGAAAAGGTAGTGGTTTACGTGGATTTAAATTGGAAGATGTTCCCGAGGGAACTATGGTACAAGATACACAGTGCAAGGAGGATGAGTATGATTTCTTGAAAGAAGGCAGAAAGCAAACAGAGGAAAGGTTGCAGAAAGCCCTATCCAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAACCAGCTAAAACATCATAGGAGTTCAGAAGAGAGAAGAGAATTTGATAACCTCATTGATCTTGAAACTTTGCTGGACGAGGATACTTTCATGCTTACAGTCATTTAG 3186 0.4077 MADVKCYVPPNQFNIEQILIEAQRRWLRPAEICEILSNYKMFQIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLDEELSHIVLVHYREVKATKANFRGAAKENQESLPYAQIDKLPGSTEKEIFLSCSLHPHNYQVPSHTIDTTSMKSTQATEYEEAESALNNYASSEDYSFLETQHPVVEKIPDPYCPPQFINEQEKLCGTPGMNHIMLSQAGKIKDIHNVRLAYEPPQHLGFSMWEYILENNGRSQYMPLQPVLPEIQPDNMGINSNPSLMRSNFTTNITKVNGKENMVQVEGNWQVMNELYEFDPQRSLEQCLIHQDKPKVLMIDDPQEKLLDAKEKIETNRSLDGIDDTNLTLKKALLDGSLAEEGLKKLDSFNQWMSKELGDVEESKTPSTFSAYWGTVENENDVDNATIPSEVHLDTYALDPSISHDQLFTIIDFSPSWAFEGSETKILIYGQFLRSLQEAEQCKWSCMFGEVEVPANIIDNGVLSCYTPPHKTGRIPFYVTCSNRLACSEIREFDFRDIYTQEVNNAAEQRESISDNFSVRFEELLYMGHTLPQNFDPISVSEKSELRSKISSLLRKEEDDWDKLLKLTLEKDFSPQNVQEHLLQNLLKDKLLGWLLQKVIEDGKGPNVLDEGGQGVLHLAAALGYDWALQPTVIAGVNVNFCDVNGWTALHWAAFCGRELTVASLISLGAAPGVLTDPSPEHPSGRTPADLASANGHKGIAGYLAESSISVQLLSLDMNRDTRESSGSKVVYRVQHNTTEVNDDRLSYELSLKDSLAAVCNASQAAARIHEVYRVQSFQRKQLKEYDDKFGISDEDALSLITVKPHKVGQRNEPVHAAAIRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKLEDVPEGTMVQDTQCKEDEYDFLKEGRKQTEERLQKALSRVKSMVQYPEARDQYHRLLNVVTEIQENQLKHHRSSEERREFDNLIDLETLLDEDTFMLTVI 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04548 1061 Pfam Ankyrin repeats (3 copies) 691 785 IPR002110 GO:0005515
Aip03g04548 1061 SMART iq_5 911 933 IPR000048 GO:0005515
Aip03g04548 1061 SMART iq_5 888 910 IPR000048 GO:0005515
Aip03g04548 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 938 IPR027417 -
Aip03g04548 1061 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Aip03g04548 1061 SUPERFAMILY Ankyrin repeat 671 782 IPR036770 -
Aip03g04548 1061 SMART CG_1_2 18 136 IPR005559 GO:0003677
Aip03g04548 1061 Pfam IPT/TIG domain 483 559 IPR002909 -
Aip03g04548 1061 Gene3D - 648 791 IPR036770 -
Aip03g04548 1061 Coils Coil 980 1000 - -
Aip03g04548 1061 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1028 - -
Aip03g04548 1061 ProSiteProfiles IQ motif profile. 890 918 IPR000048 GO:0005515
Aip03g04548 1061 ProSiteProfiles Ankyrin repeat profile. 719 751 IPR002110 GO:0005515
Aip03g04548 1061 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 1028 - -
Aip03g04548 1061 Gene3D Immunoglobulins 477 572 IPR013783 -
Aip03g04548 1061 ProSiteProfiles IQ motif profile. 912 936 IPR000048 GO:0005515
Aip03g04548 1061 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Aip03g04548 1061 SMART ANK_2a 758 787 IPR002110 GO:0005515
Aip03g04548 1061 SMART ANK_2a 719 748 IPR002110 GO:0005515
Aip03g04548 1061 Gene3D - 887 935 - -
Aip03g04548 1061 Pfam IQ calmodulin-binding motif 914 931 IPR000048 GO:0005515
Aip03g04548 1061 Pfam IQ calmodulin-binding motif 890 909 IPR000048 GO:0005515
Aip03g04548 1061 SUPERFAMILY E set domains 483 569 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04548 Aip-Chr3 129804691 129811075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04548 59 1058 CAMTA Transcription Factor Family AT2G22300 48.596 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aip03g04548 Ank_2 8.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04548 K21596 - gmx:100783055 1509.97