Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04544 ATGAGCTTCTTATGTTTGGTTCTGTTATTGGGTTGCTTATGTTCATTTGTGCTGCCTGATGCTCAAGGAGACGCTCTATATGCGTTGAAGCTATCACTGAATGCTTCATCTAACCAGCTTACTGATTGGAATGTAAATCAAGTGAACCCTTGTACTTGGTCGCGTGTTAACTGTGACCCGAGCTACAATGTCATTCAAGTTTCGCTAGCATTAATGGGACTCACAGGAACCTTGACCCCAAGAATAGGAGTTCTAAAAAATCTTACTGCTCTTTCTTTGCAAGGGAATGCCATCACAGGAAACATACCAAAAGAATTAGGAAATCTGACAAACTTGGGCAGGTTGGATTTGGAAAATAACAGATTAACTGGCCAAATACCATCTTCCCTTGGCAATCTAAATAAGCTCCAATTCTTGACACTAAGTCAAAACAATCTCAATGGCACTATACCGGAGTCACTTGGCAATCTCCCAAGCTTGATCAATGTCATGTTAGATTCAAATGATCTTAGTGGTGAAATCCCGGAGCAGTTGTTCAAAGTAACTAAGTACAATTTCACTGGAAATAAATTGAATTGTGGCGTGAATTATCCTCATCCTTGTGCATCTAGCAATACAGACCAAGGTTCACCACATAAATTGAAAGTTGGACTCATTATTGGAATTATTATCGGGTTAATTGTTATTCTTTTCCTTGTTGGCCTTCTATTCTTTTGGTGCAAAAATAAACACAAGGGTTACAAGCGTGAAATTTTTGTTGATGTTGCAGGTGAAGTTGACCGACGAATTGCATTTGGTCAACTAAAGAGATTTGCATGGAGAGAACTACAGATAGCAACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAAGGAGGATTTGGAAAGGTTTACAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTGAAAAGGTTAACTGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAAATGATAAGTGTAGCTGTTCATCGTAACCTGTTACGATTGATTGGGTTTTGCACAACTCCAACTGAACGCCTGTTAGTTTATCCCTTCATGCAAAATTTGAGTGTCGCCTATCGTCTACGAGAACTTAAGCCTGGGGAACCTGTTTTAGACTGGCCTACAAGAAAAAGAGTGGCTCTGGGAACAGCTCGTGGCCTTGAATATCTTCATGAGCATTGCAATCCCAAAATTATTCATCGAGATGTGAAGGCAGCTAATGTATTACTTGATGAAGATTTTGAGGCAGTTGTTGGCGACTTTGGTTTGGCAAAGTTAGTTGATGTCCGCAAGACTAATGTGACAACTCAAGTTCGTGGAACAATGGGCCATATAGCTCCTGAATACTTGTCCACTGGAAAGTCGTCAGAGAGGACTGATGTTTTTGGCTATGGGATTATGCTTTTGGAGCTGGTTAAGAAATTAGAACGGGAGAAGAGACTAGACGCTATTGTTGACCGCAACCTAAATAAAAATTACAATATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTTTGCACACAAGGAACACCAGAGGATCGGCCACTGATGTCCGAGGTTGTAAGAATGCTAGAAGGAGAAGGTTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAAGTCAATCGGAGGCAAGAATATGAGAGATTACAAAGAAGATTCGACTGGGGTGAAGATTCAGTCTACAATCAAGATGCCATTGAGTTGTCTGTAGCGGCTTTTGCTTGTAGATTGACTCAGAATTCAGAACCTCCGTCAAGAGCTGATGCTTCAGTAGCCTCCAACCTTAAGGCTCCATATTAG 1833 0.4108 MSFLCLVLLLGCLCSFVLPDAQGDALYALKLSLNASSNQLTDWNVNQVNPCTWSRVNCDPSYNVIQVSLALMGLTGTLTPRIGVLKNLTALSLQGNAITGNIPKELGNLTNLGRLDLENNRLTGQIPSSLGNLNKLQFLTLSQNNLNGTIPESLGNLPSLINVMLDSNDLSGEIPEQLFKVTKYNFTGNKLNCGVNYPHPCASSNTDQGSPHKLKVGLIIGIIIGLIVILFLVGLLFFWCKNKHKGYKREIFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQGTPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSVAAFACRLTQNSEPPSRADASVASNLKAPY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04544 610 SUPERFAMILY L domain-like 22 192 - -
Aip03g04544 610 PANTHER LRR RECEPTOR-LIKE KINASE 480 580 - -
Aip03g04544 610 ProSiteProfiles Protein kinase domain profile. 283 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04544 610 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Aip03g04544 610 Gene3D Ribonuclease Inhibitor 20 202 IPR032675 -
Aip03g04544 610 SMART serkin_6 283 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04544 610 Gene3D Phosphorylase Kinase; domain 1 252 359 - -
Aip03g04544 610 Gene3D Transferase(Phosphotransferase) domain 1 360 554 - -
Aip03g04544 610 Pfam Protein kinase domain 284 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04544 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 480 580 - -
Aip03g04544 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 480 - -
Aip03g04544 610 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Aip03g04544 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Aip03g04544 610 SUPERFAMILY Protein kinase-like (PK-like) 263 535 IPR011009 -
Aip03g04544 610 PANTHER LRR RECEPTOR-LIKE KINASE 5 480 - -
Aip03g04544 610 MobiDBLite consensus disorder prediction 591 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04544 Aip-Chr3 129789520 129793801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04544 1 580 Receptor kinase-like Gene Family AT5G10290 73.798 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aip03g04544 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04544 - - gmx:100793416 996.112