Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04526 ATGAAGCCACACTTTATGCCTCAAACGTTATCCTCTGTTTCGCCGCTCATGGGTTTTCTTCCCAGAAAACTAGTGCTACTGCAACTGCAACATCAGAGTGAGCATATGATTATGAACACAGTATCACATAGCCCTAGCCCTAGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCCTCTTCAATCATCACTGTCACTCCCTATCCCCATCCCGCCAAAGTTCCCTTTCCCTTTAATCCCTATCCGTGATGAAGGGTTTCACGTGCATCTTCTTCAACTTGGCATGATTATCATGGCCGGCACCGTTGGAATCGCGATGCTTCTATGTGCCGTCTCCTTGATCCGAAGGATCTGTTGTTCCTGGAGGCATAACCGCACGGGAGGAAACACGCCCATACTGTTCCATGTTAATGGAGATTCTGCTGTTTCAGGTTCGGATTTCGATGATGATGAGGGAGCCTTGGTTGATCACCCTATATGGTTCATCCGCACGGTGGGGCTGCAGCAATCGGTTATAGATTCCATCACAGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTTCAGATTGCTCTGTTTGCCTCGCTGAGTTCCAAGAAAACGACTCTCTCAGGCTGTTACCAAAGTGCAGTCACGcctttcacatcccttgcattgacacgtggcttagatcgcacaagaattgccctctctgccgcgcACCCGTTCTTCATGATTCCGGTGCCGCAACTGCTATTAGTACGGATGTGATAGTTCCCGAGGCTGATTCAAATGGTTCTGGTGAGAATCAAGAAAATGGTGAGAGTAGTTCAGTGAGGAATATTGGAGATGAGGATGATGGGGGTGAAGATGGAGAAACCCTAGAAAAGATGAATAGGCACAGAGATGCTTCGATTACACAACCAATGAGGAGGTCGGTTTCCATGGATTCATCATCCATGTTTCGTGATTTGAATTCTGATGATCAAGATGACAAAATCACCAATCCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGAAGCCCTTTTTCACATAACAGGAAATGCTCCACTTCTACACACTCTAGGAGCCACAGTTCAACTCTCCCTTTGTAG 1125 0.4427 MKPHFMPQTLSSVSPLMGFLPRKLVLLQLQHQSEHMIMNTVSHSPSPSPGPGPGPAPSPSPLQSSLSLPIPIPPKFPFPLIPIRDEGFHVHLLQLGMIIMAGTVGIAMLLCAVSLIRRICCSWRHNRTGGNTPILFHVNGDSAVSGSDFDDDEGALVDHPIWFIRTVGLQQSVIDSITVFVYRKGERLIDGSDCSVCLAEFQENDSLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLHDSGAATAISTDVIVPEADSNGSGENQENGESSSVRNIGDEDDGGEDGETLEKMNRHRDASITQPMRRSVSMDSSSMFRDLNSDDQDDKITNPSSRIYKLASIAFQKRPRSPFSHNRKCSTSTHSRSHSSTLPL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04526 374 MobiDBLite consensus disorder prediction 256 274 - -
Aip03g04526 374 MobiDBLite consensus disorder prediction 39 64 - -
Aip03g04526 374 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
Aip03g04526 374 MobiDBLite consensus disorder prediction 355 374 - -
Aip03g04526 374 MobiDBLite consensus disorder prediction 46 64 - -
Aip03g04526 374 MobiDBLite consensus disorder prediction 304 319 - -
Aip03g04526 374 SUPERFAMILY RING/U-box 182 242 - -
Aip03g04526 374 MobiDBLite consensus disorder prediction 256 374 - -
Aip03g04526 374 SMART ring_2 194 235 IPR001841 -
Aip03g04526 374 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 69 325 IPR044675 -
Aip03g04526 374 Pfam Ring finger domain 193 236 IPR001841 -
Aip03g04526 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 244 IPR013083 -
Aip03g04526 374 MobiDBLite consensus disorder prediction 289 303 - -
Aip03g04526 374 CDD RING-H2_PA-TM-RING 193 236 - -
Aip03g04526 374 PANTHER RING-H2 FINGER PROTEIN ATL54 69 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04526 Aip-Chr3 129563183 129564670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04526 148 319 C3H Transcription Factor Family AT4G33565 46.328 2.22e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04526 - - adu:107481823 622.854