Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04516 ATGTACTCCGGGCCCCACGGTGGGCGCCAAGTGATTCGTCCTGGTACAGGGTGGCCGAGTTTAGCGATTCCGAGCAAGCGTCTGTCGGAGAGGGAGAGCTATACGTCGGCCTGGAACGaacaccgcggcgggaatacctgcacaagatactccgacgctcaagtcaTGGTAGACGAGGAGGAGGCGTCTATCCTGCTGCTCTTGTGTGTTGCCAGTGCCGCTAAGATTCTAACATGCTTGGTCAAGACGCCTCTGGCCATCAGAAGGCGCGGCGCGGAGGAGTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCGGAGACTCCAAGAGGGTCTGTGTCTGTGGTGGGGTCATCATCGGAGTTCCAGTTGAAGAGGGAGAAGCTGGCCTTCTACGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTACCTCGGGAGTGACACGGTGGCCAAGAACCATGAGCTGCTGAGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTCGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAGACTCTGTGGTTGCAGGACAGTCCCACAGAAGACATCACCAGCATCCTGTACGATGTTTTCGATTACTTTGAGGAGGTTAGGGAGCAAGGCGGGCGCGTGTTGGTTCACTGCTGCCAAGGGGTTTCGAGATCGACCTCTCTGGTGATCGCGTATCTGATGTGGAGGGAAGGGCAGAGCTTCGAGGATGCGTTTCAGTACGTGAAGAATGCGAGGGGTGTGACCAATCCTAACATGGGTTTTGCGTGTCAGTTATTGCAGTGTCAGAAACGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTTCGGATGTATAGAATGGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTTCCTAAGATTGTCAACCACCCCTCTGCACAGGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTTCCTTCTGCTATTTATGTTTGGACAGGCAACAACTGCAATTCGGTTATGTCTTCTAATGCAAGAGGCGCCGCATCTCAGGTTGTTCGCTATGAGAGGGCTACGGCTCCTGTTCTTACCATCCATGAGTATGACGAGCCACCGGAGTTTTGGATTGCTCTTGCCTCTGCTGATTGTGACCAGCAGGAGAAGGAGGACACAAGCTTGGAAGCTGTTCGTCCTAGGAAGCTTGATGAATATGATTTGGATTATGAGATTTTCCAAAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACCTGCCTTCCAGCCAGAGAAAGCGGTTGGGGGAGACTGCGCCGGAAACTCGCCAGCGGTTTCATCAAAGGATTGTTCACTTCATCCAAAAGGAACTCTACTAATGAAGAAGCTGCTCTTGTCATGGAAGATTTTGCTGTTAATGTTGATCCCAATGATTGCTCAGGCAGGGAAAAAGGTTATGTTGAAGTGTTGGATCATTTTGTTCCCATTACGGATGTGGATTCATCATTGCCAACATCATCAGATTATCTTCCTTGTTTCACGAGCAGCAGTTCCAAGTCACCAACGCTCTCGCCCTCCAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCAACAAATTTGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGATTCAACCGAAACTATTTATGCCAAAGATGCTTCTGTATTGGACAGTTCCTCTCTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACATCCGGAGGGTCCACCTTCTTTTTGCCATTGAAAGGGTCTATACCCTCCATTGCAGAGCGCAGAGGTAGTAATCCACCACCTCGCATGTTGCTACCTTCTTCAGTCACCGAGTCACCCCATCCTCACAGGAGCAAGATTCATGTAAGATCAAAGTCATTTTCTTTGCCGGAATTGGATGATAACTTGTTAAAGGATGTTGATTGCAAGCAAGCTGATCCTGCTTCATGTAAATAA 2022 0.4847 MYSGPHGGRQVIRPGTGWPSLAIPSKRLSERESYTSAWNEHRGGNTCTRYSDAQVMVDEEEASILLLLCVASAAKILTCLVKTPLAIRRRGAEEWPSAGSDDLGVWPLPETPRGSVSVVGSSSEFQLKREKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEEVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSAQALDSRGAFIVHVPSAIYVWTGNNCNSVMSSNARGAASQVVRYERATAPVLTIHEYDEPPEFWIALASADCDQQEKEDTSLEAVRPRKLDEYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFIKGLFTSSKRNSTNEEAALVMEDFAVNVDPNDCSGREKGYVEVLDHFVPITDVDSSLPTSSDYLPCFTSSSSKSPTLSPSSSDYASSFTFSPSSTNLSSQQPSPSTSSMDSTETIYAKDASVLDSSSLFHKKGDVFLADQTSGGSTFFLPLKGSIPSIAERRGSNPPPRMLLPSSVTESPHPHRSKIHVRSKSFSLPELDDNLLKDVDCKQADPASCK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04516 673 PANTHER MKPA PROTEIN 38 628 - -
Aip03g04516 673 Pfam Dual specificity phosphatase, catalytic domain 146 276 IPR000340 GO:0008138|GO:0016311
Aip03g04516 673 MobiDBLite consensus disorder prediction 546 567 - -
Aip03g04516 673 ProSitePatterns Tyrosine specific protein phosphatases active site. 222 232 IPR016130 GO:0016311|GO:0016791
Aip03g04516 673 Gene3D Protein tyrosine phosphatase superfamily 116 280 IPR029021 -
Aip03g04516 673 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 131 279 IPR029021 -
Aip03g04516 673 SMART dsp_5 138 277 IPR020422 GO:0006470|GO:0008138
Aip03g04516 673 Gene3D Severin 290 388 IPR029006 -
Aip03g04516 673 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 38 628 - -
Aip03g04516 673 SUPERFAMILY Actin depolymerizing proteins 284 382 - -
Aip03g04516 673 MobiDBLite consensus disorder prediction 612 647 - -
Aip03g04516 673 CDD DSP 139 273 - -
Aip03g04516 673 ProSiteProfiles Dual specificity protein phosphatase domain profile. 138 280 IPR020422 GO:0006470|GO:0008138
Aip03g04516 673 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 197 258 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04516 Aip-Chr3 129431505 129434658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04516 84 174 Protein tyrosine phosphatase (PTP) family AT3G55270 50.962 3.40e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04516 - - gmx:100782633 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04516 03 129431505 129434658 Aip03g04516 03 129431505 129434658 ECH
Aip03g04516 03 129431505 129434658 Aip10g01155 10 16468550 16471111 PCT