Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04491 ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAACCAATGTGTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAACTTGTTTGCGGGGGATGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGCACCACCAGCACCCAGTCAAGTCGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCTTCTGTCAAATGTGCACTTTGCCAATATGTTACTAATGTCAATATGAACAATGGAAGGCTTCCAATCCCAGTCCATAGACCTAATGGAACAACCAACTATGGGACAGTACCCTCTACTTCAACATCGATGCCCCAATCTCAGACCCAAACCGTTGTGATAGAGAATCCCATGACTGTTGATTCAAATGGAAAATTGGTTAGCAATGTTGTTGTTGGGGTTACAACAGATAAAAAATAA 534 0.4513 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLVCGGCRTLLMYTRGATSVRCSCCQTVNLAPPAPSQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVNMNNGRLPIPVHRPNGTTNYGTVPSTSTSMPQSQTQTVVIENPMTVDSNGKLVSNVVVGVTTDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04491 177 PANTHER PROTEIN LSD1 1 177 IPR040319 -
Aip03g04491 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Aip03g04491 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Aip03g04491 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Aip03g04491 177 PANTHER PROTEIN LSD1 1 177 - -
Aip03g04491 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Aip03g04491 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Aip03g04491 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04491 Aip-Chr3 129174085 129177408 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aip03g04491 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04491 - - gmx:100776394 338.576