Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04489 ATGAAACAGTTCAAATTGGGTGCCAAAGAGGATAATTCTCTTAGGCACAAACCAAAAATGGAAAATGCTGTTGAACCTCCTAGCAGTCCGCGACACAGAAATGTATCAGCCAGGTGGAATCCACTTGAAGCATGTAGGCCTAGAATTGATGAAGCTCCTGTGTTTTATCCTACTATTGAGGAATTTGAAGATACTATTGGCTTCATAGCTAAGATCCGCCCCCAGGCTGAATCCTACGGCATATGTAGGATTATACCCCCAACTTCCTGGGTTCCACCGTGTCCGCTCAAAGAGAAGCATGTGTGGGAAAATGCTACATTCCCTACCCGTATTCAACAAATTGACTTGCTTCAGAATAGAGAGCCAATGAGAAAGAAAAGTAAGGGAAGGAAGCGAAAGCGTAGAAAGCAATCGAAAATGGGCTCATGTAGGAGAAATGAAAAACCTAGTTCGGAAGGTGATGTTACTTCTGAGCGTGAAGAGAAATTTGGATTCCAATCAGGTTCAGATTTCACACTCAAGGATTTTGAGCAATATGATAGACTTTTTAAGGATTCCTACTTTGGCCTGAATGATCCCGCCGGAGATCAAAAGATTGGTGATAATGATCAGCAGAAGAGATGGGAGCCCTCTGTGGAGGCAATTGAGGGCGAATATTGGCGGATAGTAGAGCAATCTACAGATGAAGTTGAGGTCTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTCCCAAAGTCATCATCTTTTACTAAGAGCGCAGATCAATATAGCATGTCTGGTTGGAATCTAAATAACTTCCCAAAATTGCCAGGCTCTGCATTATGTTACGAGGGAAGTGATATCTCGGGTGTTCTAGTTCCATGGTTGTATGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCATTGGGGCGAGCCAAAAATATGGTACGGTGTACCTGGAAGCCATGCCACAGCTTTGGAGGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAGCAACCAAATCTACTCAATGAATTGGTGACTCTCTTATCTCCTTCAATTCTTAAATCTGAAGGTGTGCCCGTATATCGTGCTGTCCAGCATTCTGGAGAATTTGTTGTTACTTTTCCAAGGGCATACCACTCTGGCTTCAACTGTGGCTTCAACTGTGCGGAGGCTGTGAATGCGGCTCCCGTCGATTGGTTTTTGCATGGCCAGAATGCTGTCGAGCTTTACAGTATGCAGCGTCGTAAGACATCATTATCGCATGACAAATTGTTATTCGGATCAGCTCAGGAAGCTGTAAGAGCCCTGTCAGATCTAACTCTTCACGGAAAAGAAAATGTCAAAAATTTTAAATGGAAAAGTTTCTGTGGGAAAGATGGAGTTCTGACCAAGGCACTTAAGATGAGGATAAAGATGGAAAAGGAGAGGCTTGACTTTCTGGCTCATTTAAAGAGGTTTCGGATGGATGATGACTTTGATTTGCACAAGGAAAGAGAGTGCTTTTCTTGTTTCTATGATTTGCATCTATCTGCTGTTGGATGCAAGTGTTCTCCTGACCGTTATTTTTGTCTTAGACACTCAAATTTGCGTTGCTCGTGTACAATGGATGCAAGATTTGTTCTGTTTCGTTATACTACAGAAGAGCTAACTACATTGGTTGAAGCACTAGAAGGAGACTTGCATGCTATTGAAGTGTGGGAAAATCGAAGTTCTGGAATGGCTTCTGCTAATGCTGAAGATGCTTGCAAAAAATTGGTCATGGACAACGAAGCTATGGCGGAGCAGGAGCTACCTATGGATTTGAACACTGATCTTTTGTCTGGTGAGCATGATTTGCTGCATATTTCTGATAGCCATGACAATAAAGGTGAAGTCTGCTATTCAGTGGCGAAAAAGGAACGAGACAATATGGAACTTGGAGCTGGTGGTATCCTATCAGACTCGGAGAATAAAGGTTTTTCATCGTGTTCAAGAGATGATGAAAATTTCTTTTCACTTGATGGCTATAAATTATTCGGGGTTGATCTGCAAATGCATTCAGATTCAGGTGAGCAGCTCAACAGTGTATTTAAAGAGGGAGATATAGACACCTTTGATAAAACTATATCATTGACAAACCAAAGCTTCTTGATCCAAGAGTTTGGTAATTCTGTTGAGCTTGTAAGTTTGGGCTCAGTTTTGCATGGGAAGAGGTGGTGCAATGAACGTGCAATATATCCAAAAGGATTCAAGAGCCGCGTTAAGTTCTTTAGTATTCTTGATCCAACAAGACCCTGTTATTATGTTTCTGAAATCTCTGATGCTGGATTTCTTGGTCCTCTTTTCAAGGTTACCATGGAAGAACATCCAACTGAAGCTTTCACAAACACATCAGCGGATAAGTGTTGGGAAACAATTCTTGACAGACTAAACGCTGAGATCGAGAGGTGTAAGAGTCTAGGTGAACAAGAACTCCCTCCCTTGGAGGTTTTGCAAAGCATTAATGGTCATAAAATGTTCGGATTCCTTAAGCCATCCATTATTCAGGCCATTGAAGCTCAAGATCCCAGTCATCAATGTGTAGAGTACTGGCATCACAAAGAACTTGCCTCTGAATCTTCAGGCAGTGGAAATGATGCCTCTAAGTGCTCAAATGGTTCAAACAACTCTCTGGGTGATGTCAAGACCAAACTTTTCGGCTTCGATTTGATAAAGCAGGAGCAAGAAGATAACATAGAAGGACATTTTCATTCATTTGAAGAGATGAAGTCATTGCTACAAGGATTCCTAAAAAAGGCCAGTCCTGCTGAGTTGAGTGCAATGCTCAAGTTCTTTAGCTCTGATTCACATGTTACTCAATGGAGAGCGGCATTCGTAGCGTTGATCGAAGAGATCCAGAAAGGTTGTAGATAA 2934 0.4189 MKQFKLGAKEDNSLRHKPKMENAVEPPSSPRHRNVSARWNPLEACRPRIDEAPVFYPTIEEFEDTIGFIAKIRPQAESYGICRIIPPTSWVPPCPLKEKHVWENATFPTRIQQIDLLQNREPMRKKSKGRKRKRRKQSKMGSCRRNEKPSSEGDVTSEREEKFGFQSGSDFTLKDFEQYDRLFKDSYFGLNDPAGDQKIGDNDQQKRWEPSVEAIEGEYWRIVEQSTDEVEVYYGADLETGALGSGFPKSSSFTKSADQYSMSGWNLNNFPKLPGSALCYEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGEPKIWYGVPGSHATALEDAMRKHLPDLFEEQPNLLNELVTLLSPSILKSEGVPVYRAVQHSGEFVVTFPRAYHSGFNCGFNCAEAVNAAPVDWFLHGQNAVELYSMQRRKTSLSHDKLLFGSAQEAVRALSDLTLHGKENVKNFKWKSFCGKDGVLTKALKMRIKMEKERLDFLAHLKRFRMDDDFDLHKERECFSCFYDLHLSAVGCKCSPDRYFCLRHSNLRCSCTMDARFVLFRYTTEELTTLVEALEGDLHAIEVWENRSSGMASANAEDACKKLVMDNEAMAEQELPMDLNTDLLSGEHDLLHISDSHDNKGEVCYSVAKKERDNMELGAGGILSDSENKGFSSCSRDDENFFSLDGYKLFGVDLQMHSDSGEQLNSVFKEGDIDTFDKTISLTNQSFLIQEFGNSVELVSLGSVLHGKRWCNERAIYPKGFKSRVKFFSILDPTRPCYYVSEISDAGFLGPLFKVTMEEHPTEAFTNTSADKCWETILDRLNAEIERCKSLGEQELPPLEVLQSINGHKMFGFLKPSIIQAIEAQDPSHQCVEYWHHKELASESSGSGNDASKCSNGSNNSLGDVKTKLFGFDLIKQEQEDNIEGHFHSFEEMKSLLQGFLKKASPAELSAMLKFFSSDSHVTQWRAAFVALIEEIQKGCR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04489 977 SMART fyrc_3 788 882 IPR003889 GO:0005634
Aip03g04489 977 MobiDBLite consensus disorder prediction 1 35 - -
Aip03g04489 977 Pfam C5HC2 zinc finger 514 565 IPR004198 -
Aip03g04489 977 Pfam F/Y-rich N-terminus 731 779 IPR003888 GO:0005634
Aip03g04489 977 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 597 975 - -
Aip03g04489 977 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 7 596 - -
Aip03g04489 977 Pfam JmjC domain, hydroxylase 292 407 IPR003347 -
Aip03g04489 977 ProSiteProfiles FYR domain FYRN motif profile. 724 782 IPR003888 GO:0005634
Aip03g04489 977 Pfam jmjN domain 53 86 IPR003349 -
Aip03g04489 977 ProSiteProfiles JmjC domain profile. 259 425 IPR003347 -
Aip03g04489 977 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Aip03g04489 977 Gene3D - 728 868 - -
Aip03g04489 977 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 596 - -
Aip03g04489 977 PANTHER LYSINE-SPECIFIC DEMETHYLASE 597 975 - -
Aip03g04489 977 SUPERFAMILY Clavaminate synthase-like 268 446 - -
Aip03g04489 977 MobiDBLite consensus disorder prediction 124 141 - -
Aip03g04489 977 Gene3D Cupin 37 409 - -
Aip03g04489 977 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g04489 977 MobiDBLite consensus disorder prediction 142 161 - -
Aip03g04489 977 SMART JmjN_1 51 92 IPR003349 -
Aip03g04489 977 ProSiteProfiles FYR domain FYRC motif profile. 784 874 IPR003889 GO:0005634
Aip03g04489 977 SMART cupin_9 259 425 IPR003347 -
Aip03g04489 977 MobiDBLite consensus disorder prediction 113 161 - -
Aip03g04489 977 Pfam F/Y rich C-terminus 786 870 IPR003889 GO:0005634
Aip03g04489 977 SMART fyrn_3 738 782 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04489 Aip-Chr3 129153596 129158515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04489 9 911 JUMONJI Transcription Factor Family AT1G30810 54.039 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip03g04489 JmjC 2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04489 - - csin:114265853 1092.41