LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04458	ATGGAGAGCATTGCCGCGCAGCTGAAGCGCGGCATATCGCGGCAATTTTCGTCGGGTTCGCTTCGTCGGAACATGAGCCGCCAGTTCACGAGACAGGCGTCGCTGGACCCTCGCCGGAACAATCTCAGGTTCAGCTTCGGGAGGCAGTCGTCGCTCGACCCGATCCGGCGAAGTCCGGTGACGCCGAGGGACGGGGAGGACGACCAAGAGCTCACGGTTCCGGACAACCTCGATTCCACCATGCAGCTTCTGTTCATGGCGTGCAGAGGTGACGTTAAGGGCGTTGAGGACCTCCTCAACGATGGCATCGATGTAAATAGCATCGATCTCGATGGACGCACTGCGCTTCACATCGCCGCTTGTGAGGGCCACGTTGAGGTCTGCGCTCTCCTTCTCAGCCGCAAGGCTAACATCGACGCTCGGGATCGCTGGGGCAGCACGGCAGCGGCTGACGCCAAATATTATGGAAATACAGAAGTTTATTATATGCTGAAGGCCCGTGGAGCAAAAGTGCCGAAAACCAGGAAAACTCCAATGACTGTTACAAATCCTCGTGAGGTTCCAGAATATGAACTCAATCCCTTAGAACTCCAGGTTCGGAAGAGTGATGGAATTTCAAAGGGGGTATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTAGATAAGGACAGTTATTCAGATCCTGATAGCATAAATGCCTTCAAGCACGAGCTCACGTTATTAGAAAGGGTACGGCATCCTAATGTGGTCCAATTTGTTGGAGCTGTCACTCAAAATGTACCAATGATGATTGTGAGAGAGTACCATGCTAAGGGTGACCTTGCAAGCTATATTCAGAAGAAAGGCCGGCTTTCCCTATCAAAAGTTCTACGGTTTTCTCTTGATATTGCTAGGGGAATGAACTATCTTCATGAATGCAAACCAGAACCAGTTCTCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGTCAACTAAAGATAGCTGGGTTTGGAAATGTGAGATTATCGCATATCTCACCTGATAAAGCAAAGCTGGCAGAGCCTGTCTCCAACATTGACCTTTTAAGCGTGTACTTGGCTCCAGAGATTTACAAAGATGAAGTATTTGACAGAAGCGTGGACGCATATTCTTTTGGTCTCATCTTATATGAGATGATTGAGGGTGTACAGCCCTTCCATCACCACTCTGCGGATGAGGCCTTGAGAATGATGTGCCTAGAAGGGAATAGACCACCATTCAAGGTCAAAGCAAAACATTATCCTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCGAGAACCTGTTGTCAGGCCAACATTTTCCCAGGTCATTGTACGGTTGGATAAAATTGTTTCAAATGGTTCGAAACACGGATGGTGGAAAGATACTTTTAAACTTCCTTGGAAATAA	1443	0.4768	MESIAAQLKRGISRQFSSGSLRRNMSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPVTPRDGEDDQELTVPDNLDSTMQLLFMACRGDVKGVEDLLNDGIDVNSIDLDGRTALHIAACEGHVEVCALLLSRKANIDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVTNPREVPEYELNPLELQVRKSDGISKGVYQVAKWNGTKVAVKILDKDSYSDPDSINAFKHELTLLERVRHPNVVQFVGAVTQNVPMMIVREYHAKGDLASYIQKKGRLSLSKVLRFSLDIARGMNYLHECKPEPVLHCDLKPKNILLDNGGQLKIAGFGNVRLSHISPDKAKLAEPVSNIDLLSVYLAPEIYKDEVFDRSVDAYSFGLILYEMIEGVQPFHHHSADEALRMMCLEGNRPPFKVKAKHYPPDLKELIEECWDREPVVRPTFSQVIVRLDKIVSNGSKHGWWKDTFKLPWK	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04458	480	MobiDBLite	consensus disorder prediction	52	73	-	-
	Aip03g04458	480	SMART	serkin_6	199	462	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g04458	480	SUPERFAMILY	Ankyrin repeat	81	178	IPR036770	-
	Aip03g04458	480	Pfam	Protein tyrosine and serine/threonine kinase	207	457	IPR001245	GO:0004672\|GO:0006468
	Aip03g04458	480	ProSiteProfiles	Protein kinase domain profile.	195	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip03g04458	480	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	33	478	-	-
	Aip03g04458	480	ProSiteProfiles	Ankyrin repeat region circular profile.	111	143	-	-
	Aip03g04458	480	SMART	ANK_2a	79	107	IPR002110	GO:0005515
	Aip03g04458	480	SMART	ANK_2a	111	140	IPR002110	GO:0005515
	Aip03g04458	480	Gene3D	-	55	190	IPR036770	-
	Aip03g04458	480	Gene3D	Phosphorylase Kinase; domain 1	192	274	-	-
	Aip03g04458	480	CDD	STKc_MAP3K-like	205	458	-	-
	Aip03g04458	480	Pfam	Ankyrin repeats (3 copies)	86	171	IPR002110	GO:0005515
	Aip03g04458	480	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	316	328	IPR008271	GO:0004672\|GO:0006468
	Aip03g04458	480	PIRSF	ILK	8	479	-	-
	Aip03g04458	480	ProSiteProfiles	Ankyrin repeat profile.	111	143	IPR002110	GO:0005515
	Aip03g04458	480	SUPERFAMILY	Protein kinase-like (PK-like)	208	458	IPR011009	-
	Aip03g04458	480	PANTHER	SERINE/THREONINE-PROTEIN KINASE HT1-LIKE	33	478	-	-
	Aip03g04458	480	Gene3D	Transferase(Phosphotransferase) domain 1	275	474	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04458	Aip-Chr3	128880594	128885263	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04458	1	479	MAP Kinase Kinase Kinase	AT2G43850	75.992	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Aip03g04458		PK_Tyr_Ser-Thr	1.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g04458	-		-	gmx:100810411	854.744