Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04419 ATGTATAGAAAGGAAAGCAAGTCTATAGCAGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCATCCGGATCTTCTTGATGAGTTTACTCATTTTCTCTCGGACACTTCCTCAGCAGCCTCTGCTCATTATATTTCTGCTAGAAATTCTATGCTACGTGATAGGAGCTCTGCAATGCCAACTGTATGGCAAATGCATGTTGAGAAGGTTTATCTCGGTATTTTTCTGTCTCCGAGATGCTAA 246 0.4268 MYRKESKSIAEVYQEVAALFQEHPDLLDEFTHFLSDTSSAASAHYISARNSMLRDRSSAMPTVWQMHVEKVYLGIFLSPRC 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04419 81 Pfam Paired amphipathic helix repeat 1 34 IPR003822 GO:0006355
Aip03g04419 81 Gene3D Paired amphipathic helix 1 34 IPR036600 GO:0006355
Aip03g04419 81 ProSiteProfiles PAH domain profile. 1 37 IPR003822 GO:0006355
Aip03g04419 81 SUPERFAMILY PAH2 domain 1 36 IPR036600 GO:0006355
Aip03g04419 81 PANTHER SIN3A, ISOFORM G 1 61 - -
Aip03g04419 81 PANTHER SIN3B-RELATED 1 61 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04419 Aip-Chr3 128534309 128534686 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04419 PAH 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04419 K11644 - aip:110271441 123.25