Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04413 ATGACAGACCCGGATCCCTCCAAAAAGGTCGCCGATAGGTATCTGAAGCGTGAAATCCTTGGTGAAGGTACCTACGGAGTTGTATACAAAGCCATTGATACTCACACCGGACAAACGGTTGCGATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGGGTCAACTTTACAGCACTCAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCCAACATTATTGAGTTAATCGATGCATTCCCGCATAAAGGGAATTTACATCTTGTATTCGAATTCATGGAGACGGACCTTGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCTCCAGCTGATACAAAATCCTACCTCCAAATGACGCTAAAGGGTCTTGCCTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTCATGGACAGCTGAAGCTTGCAGATTTTGGTTTGGCACGGATATTTGGAAGTCCGGATAGAAGGTTCACACATCAGGTGTTTGCTCGGTGGTACAGAGCACCTGAGCTATTATTTGGTGCGAAGCAATATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATTTTTGCTGAACTTCTTCTCCGCCGACCCTTTTTGCAGGGTTCAAGTGATATCGATCAGTTAGGCAAGATTTTTGCAGCATTTGGCACTCCAACACCTGCTCAGTGGCCTGATATGGTATATCTTCCAGATTACGTTGAATATCAAAATGTTCCTGCCCCCCCTTTGCGTACTTTATTTCCAACAGCAAGTGACGATGCTTTAGATCTATTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCACAGATACTTTTCTTCTGCACCTCTGCCCACAGATCCAGAGAAGCTCCCTAGGCCAGCCCCCAAGAAGGAATCTAGGACTTCTGATTTTGATTTGCAGCAGGGTCCTACTGTGTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCTGGGCGTGATGGGTTCGAAGGAAATTCTTTTCAAGGAGTGAAGGATGATGATGGAAATTTCGGTGATTTCAGACAGACAGTTGGTGATAATACAGCGCTGACAGATCACATTTAA 1134 0.4383 MTDPDPSKKVADRYLKREILGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSHGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPAQWPDMVYLPDYVEYQNVPAPPLRTLFPTASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPEKLPRPAPKKESRTSDFDLQQGPTVLSPPRKSRRVMPGRDGFEGNSFQGVKDDDGNFGDFRQTVGDNTALTDHI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04413 377 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Aip03g04413 377 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Aip03g04413 377 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04413 377 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Aip03g04413 377 MobiDBLite consensus disorder prediction 294 362 - -
Aip03g04413 377 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 354 - -
Aip03g04413 377 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Aip03g04413 377 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04413 377 PANTHER CELL DIVISION PROTEIN KINASE 9 354 - -
Aip03g04413 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Aip03g04413 377 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Aip03g04413 377 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04413 Aip-Chr3 128497026 128500165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04413 4 342 Core Cell Cycle Gene Families AT1G18040 80.531 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Aip03g04413 Pkinase 9.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04413 K02202 - gmx:100776618 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04413 03 128497026 128500165 Aip05g02993 05 132220680 132225057 PCT