Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04399 ATGCGTGTTGTTACAACAGAGGCACCAACAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTGAGCCAGCGCAACCACATCATTGCAGAAGAAACAGATCCAAGGCCACAAATTCAATCCACAAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACATTCTCCAACAACAGCACCAGCAGCAATGATGGCGGGTCACAGAGCAGGAAAAAGAGCAACTTTTCAGCAGCAGCGACGTTGAGGGGGCTGGGGTGCACGGCGGGGGCGCCGCAGGAGGTATCGGTGCCGGCGGTGATCCGAAGCGCGGCGGAATGGGAAGGAAAGAAGGTGAGAAAGAAGAAGCACAAGAGAAGCAGCAAGGGAAGTTGCAGCAATAATGGCGTCGATGTGGATTTTCAAGATGTGTGGTGTGGCACCGCACACGGAATAGGGTTCTCTGCCGATTGTGTTGTTGGCACTTCCAGGAAGAATGCCTCTTCCTCTTCAAGACCCAAAATTGATGTTCACAAGATCAATCACAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGCAGTTTGAACCCAGAAACCATCTCGCTTCTCGACACTGATCCTAGCGACGTTTTCACACCGCGCTCTGCCTCCGAGTTCTTTGGACCCGCCGCATACTATCGCCACCTTCCAGATCCTTCCACCGATGCTTTTCCTGAGATTATGATGCTTCAAGGAGGTATAATCATGGGGAGTAGATACTCACACGATCAATTCAGAGATTTGAGACTTGATGTTGATAACATGTCCTATGAACAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAAATGAGATGGGTGCCAACATAAGGAAAACTAAGCTTCAAATTTTAGATGATGCATCGAACCATCAAGTAGATAAAACGTGTACCATTTGCCAGGAGGAGTATGAAGCTGCTGATGAATTGGGGAGGTTACATTGTGAGCACAGCTATCACTTCCACTGTATAAAACAATGGGTTGCTCACAAGAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGCAACAATTGA 1086 0.4797 MRVVTTEAPTTVAEHIKWRRPRNQLSQRNHIIAEETDPRPQIQSTRCKSTISSLLLSTFSNNSTSSNDGGSQSRKKSNFSAAATLRGLGCTAGAPQEVSVPAVIRSAAEWEGKKVRKKKHKRSSKGSCSNNGVDVDFQDVWCGTAHGIGFSADCVVGTSRKNASSSSRPKIDVHKINHRQRSSSCLGRRSLNPETISLLDTDPSDVFTPRSASEFFGPAAYYRHLPDPSTDAFPEIMMLQGGIIMGSRYSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKENEMGANIRKTKLQILDDASNHQVDKTCTICQEEYEAADELGRLHCEHSYHFHCIKQWVAHKNFCPVCKQQVVARNN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04399 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 360 IPR013083 -
Aip03g04399 361 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 359 - -
Aip03g04399 361 SUPERFAMILY RING/U-box 311 357 - -
Aip03g04399 361 SMART ring_2 312 352 IPR001841 -
Aip03g04399 361 Pfam Ring finger domain 311 353 IPR001841 -
Aip03g04399 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 359 IPR045191 GO:0061630
Aip03g04399 361 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04399 Aip-Chr3 128308074 128310674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04399 12 267 C3H Transcription Factor Family AT1G73760 39.373 1.17e-39 140