Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04372 ATGGCCGCCAACAACAATCCGCATTCTCTCACTGATCAGAATGCGAATTCTATGCCTCCGCCTATTCTTGATTATCAATTCTCCACTACCACTGCTCTTAGGCTTCTGGTCGTTGATCATGATCCTGAACACTTAAGACTTATTCAAGATATGGCTTTTCAATGCAACTATCAAGTGACCACATGCTTCGAGGGTTCTCATGCTTTGAATCTTCTTCGGGAGAGCAGTGGGTGTTTCGATGTGGTACTATGTGATGTTCATATGCCAGGGATAATGGATGATGGTTCTCGATTACTTGACCATGTTCTCCAAGAATTCAATATTCCTGTCGTAATGATGTGTGCAACAGATGATGAGTCATCAATTGCAGTGATGGAGGGTATGAAAAAGAAAGGGGCTTGTTATAATTTAGTTAAACCTCTTAGCGAGCAAGATTTGATGAACATATGGCAGAATGTGATGGAGAAAACCCAGAAAGAAGTTTTCTATGACGATGATGATGAAAGCAAAGGAACAGTGAATAGAAGGAAGAGGAGCTTATCAACCGAAAGAGATGATCATGATGTTCAGTCCAACACTCCCAACAAAAAGCCACGTTTTATTTGGACCCAAGAAAGGCATCAAATGTTCGTCGATGCTGTACTCCAACTAGGGATTGATAAAGCTGTGCCAAAGAAAATTCTAGAATTGATGGATATCCCTGACTTGACAAGGGAAAATGTAGCAAGCCATCTGCAGAAATATCGGATGCATCTTAAGCAGAAGAGTGAGGAGACTAAGCAAACAAATATTAATGGGAAGCTAAATGTTAATAGAGAAGCTAATAAGCAACTTTGTGCACCTTTGAGGGTTCAAGCTGCAACCAACATTCCTCAAATTCCACAAACACTTCAAATTCCACAAACACTGCCCCTTCATCACCAATATGTGCCAACTGTTAGTGCTGCACCTCATGCTTTGAAATTCCCTAATAGTAATCCCTTTGGTCTCATCAACAACAATGGCATTGTTGGAAGTAATATGGCACTTAATCATCAGAATAATGATTATGGTCGTTACATTATTATGAACCTAATGCAACAGCAACAACAGCAACAATCACTGGTGCAAAGTCATTATTATCCAATGATGGCTCCTCAATCCTGTGATGGAGCTGCTTTTCAAGGGGGAACGAGGGGAGGTAGTGGTGGCTGTAGGAGTGATCCTCTTGTTGAATACAATACATTTTCTTCATCATCATCAGCACCACTTGATCATTATCATCATCAAATGAATAATAATTCAGTCAGCGGAAGTGGCAGCATTGCTGAGATTCTGAATGATGGCTATATATCATCATCATCAGCACCACCCTCATCATCATCGTCCCTTTCTCCAACAGGATTCTTCTCAAGAACTCACCACCAGCACAATCATCAGCAGCTTCCAGCCGGGGACCTTGACGACAATTTTTGGGACGGCCTATATACTCTTTGA 1476 0.4126 MAANNNPHSLTDQNANSMPPPILDYQFSTTTALRLLVVDHDPEHLRLIQDMAFQCNYQVTTCFEGSHALNLLRESSGCFDVVLCDVHMPGIMDDGSRLLDHVLQEFNIPVVMMCATDDESSIAVMEGMKKKGACYNLVKPLSEQDLMNIWQNVMEKTQKEVFYDDDDESKGTVNRRKRSLSTERDDHDVQSNTPNKKPRFIWTQERHQMFVDAVLQLGIDKAVPKKILELMDIPDLTRENVASHLQKYRMHLKQKSEETKQTNINGKLNVNREANKQLCAPLRVQAATNIPQIPQTLQIPQTLPLHHQYVPTVSAAPHALKFPNSNPFGLINNNGIVGSNMALNHQNNDYGRYIIMNLMQQQQQQQSLVQSHYYPMMAPQSCDGAAFQGGTRGGSGGCRSDPLVEYNTFSSSSSAPLDHYHHQMNNNSVSGSGSIAEILNDGYISSSSAPPSSSSSLSPTGFFSRTHHQHNHQQLPAGDLDDNFWDGLYTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04372 491 CDD REC_typeB_ARR-like 36 153 - -
Aip03g04372 491 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 29 370 - -
Aip03g04372 491 MobiDBLite consensus disorder prediction 164 197 - -
Aip03g04372 491 SMART REC_2 33 150 IPR001789 GO:0000160
Aip03g04372 491 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 251 IPR006447 GO:0003677
Aip03g04372 491 Pfam Response regulator receiver domain 36 149 IPR001789 GO:0000160
Aip03g04372 491 MobiDBLite consensus disorder prediction 445 473 - -
Aip03g04372 491 SUPERFAMILY CheY-like 33 157 IPR011006 -
Aip03g04372 491 MobiDBLite consensus disorder prediction 164 193 - -
Aip03g04372 491 ProSiteProfiles Response regulatory domain profile. 34 154 IPR001789 GO:0000160
Aip03g04372 491 MobiDBLite consensus disorder prediction 445 479 - -
Aip03g04372 491 SUPERFAMILY Homeodomain-like 195 253 IPR009057 -
Aip03g04372 491 Gene3D - 32 169 - -
Aip03g04372 491 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 370 IPR045279 GO:0009736
Aip03g04372 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 253 IPR017930 -
Aip03g04372 491 Gene3D - 193 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04372 Aip-Chr3 128118017 128119826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04372 31 261 Response Regulator Gene Family AT4G31920 42.017 5.08e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04372 Response_reg 1.9e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04372 - K14491 adu:107481405 855.899