Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04342 ATGCCCTCTCCTATGCTCCCGCCTTTCGGCATCCTCTTCTTCGAAGGCCAGCGCTCCGGCAGACTCCCACCCGACCAGCGCCTCCGATGGCGCCACGACTCCGCATTACACGACGGCGCCACCGCCGGATTGGACTTGACTGGAGGGTACTACGACGCCGGGGACAACATCAAGTTCGGGTTTCCGATGGCGTTCACTACAACAATGCTGGCGTGGAGCGTGATAGACTTCGGGAGGAGCATGGGGCCTGAGCTCGGGAACGCATTGAAGGCGGTGAGGTGGGGAACGGACTACCTGCTGAAGGCAACGTCGAAGGTAGGGACCGGTGTGGTGTTCGTGCAGGTGGGAGACCCTCTCTCGGACCATAACTGTTGGGAGAGGCCAGAGGACATGGACACTCTCCGTACCGTTTACAAGGTGGATGGGTCCCACCCTGGCTCTGACGTGGCAGGAGAAACGGCCGCTGCACTTGCCGCTGCCTCCATCGTCTTTAGATCACGTGATCCCGCTTACTCTAGACTTCTCCTCAATCGAGCCGTTACGGTGTTCGGGTTCGCTGACAGGCATCGTGGTGCATACAGTAACAGCCTAAAGAAAGCAGTCTGCCCATTTTACTGTGACGTCAATGGGTACCAGGACGAGCTGTTGTGGGCAGCAGCGTGGTTGCACAAGGCGTCGCGTAGGCGTCAGTACAGGGAATACATTGTAAGGAACGAGGTGGTATTGAGAGCTGGGGACACCATTAATGAGTTTGGTTGGGATAACAAGCATGCCGGGATTAATGTTCTCATTTCCAAGGAGGTGTTGATGGGAAGAGCAAACTATTTTGCGTCGTTCAAGCAAAATGCAGATGGATTTATTTGTTCGATATTGCCCGGAATTTCCCACCCTCAAGTTCAGTATTCCCCAGGTGGTCTTATTTTCAAGGCTGGAGGAAGCAACATGCAGCATGTAACGTCCCTCTCTTTTCTGCTCCTAGCCTATTCTAACTACCTAAGCCACGCCAATAAGGTTGTGCCATGTGGCGAGACCACTGCCACGCCAGCTTTGCTCAAACACCTTGCTAAACGCCAGGTGGACTACATTCTTGGGGATAACCCAATGGGAATGTCGTACATGGTTGGATACGGTGCTCGCTACCCACAGAGGATACATCACCGGGCCAGCTCGCTCCCATCGGTGGCGGTCCACCCAGCCCACATTGGATGCAAAGCTGGATCTCGATATTTCCTTAGCCCAAATCCCAACCCGAATGTATTGGTCGGAGCCGTGGTTGGTGGGCCTAACAACAACACAGATGCTTTCCCGGATTCCAGGCCTTTCTATCAGGAGACTGAGCCCACTACATATATCAATGCCCCTCTAGTGGGCCTGCTCGCTTTCTTTTCAGCCCACTCTTGA 1401 0.5453 MPSPMLPPFGILFFEGQRSGRLPPDQRLRWRHDSALHDGATAGLDLTGGYYDAGDNIKFGFPMAFTTTMLAWSVIDFGRSMGPELGNALKAVRWGTDYLLKATSKVGTGVVFVQVGDPLSDHNCWERPEDMDTLRTVYKVDGSHPGSDVAGETAAALAAASIVFRSRDPAYSRLLLNRAVTVFGFADRHRGAYSNSLKKAVCPFYCDVNGYQDELLWAAAWLHKASRRRQYREYIVRNEVVLRAGDTINEFGWDNKHAGINVLISKEVLMGRANYFASFKQNADGFICSILPGISHPQVQYSPGGLIFKAGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGETTATPALLKHLAKRQVDYILGDNPMGMSYMVGYGARYPQRIHHRASSLPSVAVHPAHIGCKAGSRYFLSPNPNPNVLVGAVVGGPNNNTDAFPDSRPFYQETEPTTYINAPLVGLLAFFSAHS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04342 466 Pfam Glycosyl hydrolase family 9 11 459 IPR001701 GO:0004553|GO:0005975
Aip03g04342 466 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 435 453 IPR033126 -
Aip03g04342 466 Gene3D - 9 466 IPR012341 GO:0005975
Aip03g04342 466 SUPERFAMILY Six-hairpin glycosidases 11 464 IPR008928 GO:0005975
Aip03g04342 466 PANTHER ENDOGLUCANASE 11 466 - -
Aip03g04342 466 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 361 387 IPR018221 -
Aip03g04342 466 PANTHER ENDO-1,4-BETA-GLUCANASE 11 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04342 Aip-Chr3 127866072 127870970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04342 11 466 Glycoside Hydrolase AT1G70710 83.333 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04342 K01179 - gmx:100802662 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04342 03 127866072 127870970 Aip03g04342 03 127866072 127870970 ECH