Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04308 ATGGTGAATAAAAGAAAAGAGAGGGAAGGTGAAGAAGGAGTGGGAACTAAGAACAATGAAGAATTGAGCAATGAATGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCACTACTTGGGGCAAGAAGAGCAAAGAAGCGCTACATTGGCGTGCGCCAACGTCCTTCAGGGCGATGGGTGGCTGAGATCAAAGACACCATACAGAATATTAGGCTGTGGTTAGGCACCTACGACACTGCCGAAGATGCTGCTAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGCGCTAATACCCGCACTAATTTCTTTCCATCACAAGATCCTAATTCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTTCCTCTTCTTGCATGGTTACTACTTTTCCTAGTAATCATTTTGAGCAAGAAAAAAAGGCCGAACCAGAACCAGAACCAGAGCTAGAACTAGAACCAAAACCAGAACCACTTTTTTCTAAACTAATAGAAGAACAAACATACCAATTAGAAAATTTTCTAGATATTGAGGGATATGGGGCTGTTGGAGAGAATTATGATGGTGCTAGTTATGGTTCCGCTGCCACAACTAGTTGTGACTGTAGTACCATTACTTGTGACTATGGTGGAACTAACAATGTAGCAAATTTTGACCAAGAGGTTTGCATGGAGAATTTCAAGATGGAGGATGGTTGTGCTAACAATGTTGATGATGGAAGAAATAATCAAATTGTTAGGCCTAAAGGAGAATTTGAAGACTGCAATGCTGGTTTCATAGACTTCCACTTTTTGGACACTGTTGGATCATTGGTTTGCTCTTCTTCTCCTTTTGAAATAACTGAGGAAATGGTAGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGTCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAAGCTGCAAGATCGACCTGAATAG 1029 0.4237 MVNKRKEREGEEGVGTKNNEELSNEWEQIREEAASVAAALLGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPNSVPALPPKIAKLLLLRLKARSISSSCMVTTFPSNHFEQEKKAEPEPEPELELEPKPEPLFSKLIEEQTYQLENFLDIEGYGAVGENYDGASYGSAATTSCDCSTITCDYGGTNNVANFDQEVCMENFKMEDGCANNVDDGRNNQIVRPKGEFEDCNAGFIDFHFLDTVGSLVCSSSPFEITEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLKLQDRPE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04308 342 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Aip03g04308 342 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 1 341 - -
Aip03g04308 342 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Aip03g04308 342 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 341 - -
Aip03g04308 342 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Aip03g04308 342 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04308 Aip-Chr3 127558405 127559433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04308 47 108 AP2-EREBP Transcription Factor Family AT5G19790 73.846 3.36e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g04308 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04308 K09286 - gmx:100793940 300.056