Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04298 ATGGGCAGGTCACCATGCTGTGAGAAGGTTGGGTTGAAGAAAGGGCCCTGGACTCCCGAAGAAGACCAAAAGCTCATGTCCTATATTGAAAAACACGGCCATGGAAGCTGGCGTGCTTTGCCTTCCAAAGCTGGACTCCAAAGATGTGGAAAGAGTTGTCGACTCAGGTGGACTAACTACCTCCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAGCTTCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCAGCTTCCCAAGAGGACGGACAACGAGATCAAAAACTACTGGAACACGCACCTAAAGAAGAGGCTAACAAGAATGGGAATAGATCCCACAACCCACAAGCCCAAAACTGATCCCATCGGCGGTGGCTCAGACACCAACTCTTCGCAATCGAAGGACTTAGCGAATCTGAGCCACATGGCGCAGTGGGAGAACGCTCGTCTTGAAGCGGAAGCCAGGTTGGTGAGAGAGTCGAAGCTTCTTCTTCAGGTCCAGCAGACACAACAAACAAACACAACACAACCTCCTCCGGCGCGCCTCGTCCTTAACAAGATCACGGCTGCTCAACAACAGCCCTTGCTTCCGCCCTGCCTTGACGTGCTCAAGGCGTGGCAGAACTCATGGTCTTCCAAGCCGCAACTGTCCGTACCATCAAGGGAAAATTTCAAGATGCATAGTATGTATGCCATGATGCTCTCCACTGATGAGAATCTTGAATCTCCAACTTCCACCTTGTGCTTTCCCGGAGGCGCAAGTGGAAGTAGCGCCATGCTTCCTATCATGTCCTCCACAACCACCTCCGCCACTACTATCACAGTAGATGCTCTCAACGAAAACTTACTTAATCCTTCTCTCACCAAAACTAAGATTGATAGCAACGGCACCATGGTAACCCCATGTGACGAAGGAGTGTTCATTACGAAAGGAGGTAATAATAATGAAACTGACTCATCATGGTACATGTTGAAACAGAACAACCCTGAAATAGAACTTGATGACGATGAAATAGTGGAAAATAATAATAACAACAATAATAACAGCTTCAGAGATGACGACATCATGGTGGCAGTGGAAGCATTCAGAGGAAGAGGCGGAGGGGGTTACGACGGTGTTAATGTTGTCCCACCAACACTGTCCTCAACCGGCGATGTTGTGGTCATGGAAGCAGGACTCATATGCAGTAGCAATAACAACAACGGTGATGATGATGCCCACATGCCTTACCATTCCAACGACACCTTGGCAATCATCAATGATGGTGATGGAAGCATATGTAACGTCAGCCTCGAAGAGAATAAGCATTATTGGAACACCATACTTAACTTGGTCAATGATGCTCAAGTCATGTTCTAA 1392 0.4763 MGRSPCCEKVGLKKGPWTPEEDQKLMSYIEKHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDPIGGGSDTNSSQSKDLANLSHMAQWENARLEAEARLVRESKLLLQVQQTQQTNTTQPPPARLVLNKITAAQQQPLLPPCLDVLKAWQNSWSSKPQLSVPSRENFKMHSMYAMMLSTDENLESPTSTLCFPGGASGSSAMLPIMSSTTTSATTITVDALNENLLNPSLTKTKIDSNGTMVTPCDEGVFITKGGNNNETDSSWYMLKQNNPEIELDDDEIVENNNNNNNNSFRDDDIMVAVEAFRGRGGGGYDGVNVVPPTLSSTGDVVVMEAGLICSSNNNNGDDDAHMPYHSNDTLAIINDGDGSICNVSLEENKHYWNTILNLVNDAQVMF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04298 463 MobiDBLite consensus disorder prediction 118 145 - -
Aip03g04298 463 CDD SANT 69 112 IPR001005 -
Aip03g04298 463 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 459 - -
Aip03g04298 463 CDD SANT 16 61 IPR001005 -
Aip03g04298 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g04298 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g04298 463 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g04298 463 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 459 - -
Aip03g04298 463 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip03g04298 463 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g04298 463 SMART sant 66 114 IPR001005 -
Aip03g04298 463 SMART sant 13 63 IPR001005 -
Aip03g04298 463 Gene3D - 69 116 - -
Aip03g04298 463 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g04298 463 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip03g04298 463 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04298 Aip-Chr3 127446460 127448364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04298 1 260 MYB Transcription Factor Family AT3G01140 62.692 5.85e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g04298 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04298 K09422 - gmx:100799222 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04298 03 127446460 127448364 Aip03g04298 03 127446460 127448364 ECH
Aip03g04298 03 127446460 127448364 Aip10g03008 10 126591645 126596421 ECH