Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04291 ATGGGTAGGGTAAAGCTGAAGATAAAGAAGCTGGAGAACATGAATGGGCGTCAAGCAACATATGCTAAAAGGAAGAATGGAATTATCAAAAAGGCTACAGAGTTATCTATTCTTTGTGATATTGATATTATACTTCTCATGTTCTCACCAACTGGAAAACCTTCTTTGTGTAGAGGCAGGCGAAGTAACTTTGAGGAGGTTATTGCAAAGTTTTCTCAACTAACTCCACAAGAAAGAGCAAAAAGGAAGTTGGAGAGTCTTGAGGCACTGAAAAAGACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTTTGGGTACAAGTAGTCAAACTATTGAGGACCTAAGTAATCAAGCTAGGCTATTACAGACTCAAATTTCTGAAACACAGAAGAGATTAAGTCAGTGGAAGGAATTTGAAAAAATCAATAATGTGGAACAACTTGAACAGATGGAAAATTCATTGAGAGATTCAATCAATCAAATTCGAAACCGTAAGGAACATATTAAAAACCAACAGCTTGTGTCACTGCAATGCAATAACCAGTTCAATGAAATGCATATTCCGTTTAGAATGGGTACTGAGCAGCATCTCCAACCTCTACCATGGATTGGTAATGGTGACAGCCCAAATCTAGTTTTACCTGATGACTCTAGCTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCTCATCATTTGGGAGTTATGCAAGTTACATTGGATCAAGTAGTAAAACAGATATTTCAAACTCAGGGCAAGAAAATGGTGTCCTAAGTGATTTGAGCAGCACTACTGCTCCATTGAGACTCCCATTGAATAATGGACATCAGTTTCCATACATGCCATCATACAATTTCAATTTGCTGAATGATTTCAAGTTCCAAGCAGCTCCAGAGATGAATCATCATCATAATCAGCCACAAGAAAACCATAATTTAAGTTTTCATCATCATGTCAACAATGGAAACTTTGAAGCCCCAAGGAATGCTTATGACTCCAATCACCACCACCACCATGGTTGGGCTTCCACTTCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGCAACCAAACTGA 1101 0.3824 MGRVKLKIKKLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEVIAKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQTQISETQKRLSQWKEFEKINNVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQCNNQFNEMHIPFRMGTEQHLQPLPWIGNGDSPNLVLPDDSSLLLHKDVEGSASSSFGSYASYIGSSSKTDISNSGQENGVLSDLSSTTAPLRLPLNNGHQFPYMPSYNFNLLNDFKFQAAPEMNHHHNQPQENHNLSFHHHVNNGNFEAPRNAYDSNHHHHHGWASTSGPCAVTMFDEHLYAQQPN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04291 366 CDD MADS 2 54 - -
Aip03g04291 366 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 Coils Coil 77 97 - -
Aip03g04291 366 Coils Coil 147 174 - -
Aip03g04291 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 365 - -
Aip03g04291 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 Coils Coil 114 134 - -
Aip03g04291 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 365 - -
Aip03g04291 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Aip03g04291 366 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Aip03g04291 366 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04291 Aip-Chr3 127316050 127319695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04291 1 366 Type I MADS-box Gene Family AT2G03060 50.000 1.10e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip03g04291 SRF-TF 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04291 - - lang:109356063 508.064