Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04282 ATGACGAGGATACCCCTATTGGAAGGCATTTGGCCCTCCTCGCTATATACACGCCAAAATCCCCTTTCTTTCTCTCGTTTCATTAATTGCAGGTCTGTCTCAGCTCCTTTTTCGCCGCTGAGTCTCAGATTCCCTTGTTATCTCTCAGGATTCACCAAACCGATCCCCTTCCCTTCTTATCTTTTGGGAGAAATGAGCGATCATCTGCACCCGGCTCAGCCATCTCCCGAACCCGAACCGCCGCTAGATGAACCTCCGGCCGCCACGGCGGGGCCCTCCCATTCTGCTCCGAGAGCCGAGGACGAGGATGAGGACGAGGATGAGGAGGCGCCGCTGTTGCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCTCGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGTGGTGCTGCATTTTGCCGTTCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTTCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCAGCAACTCAAGTCGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG 1011 0.5183 MTRIPLLEGIWPSSLYTRQNPLSFSRFINCRSVSAPFSPLSLRFPCYLSGFTKPIPFPSYLLGEMSDHLHPAQPSPEPEPPLDEPPAATAGPSHSAPRAEDEDEDEDEEAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04282 336 Coils Coil 206 226 - -
Aip03g04282 336 Pfam Protein of unknown function (DUF3675) 169 287 IPR022143 -
Aip03g04282 336 MobiDBLite consensus disorder prediction 66 110 - -
Aip03g04282 336 MobiDBLite consensus disorder prediction 73 87 - -
Aip03g04282 336 CDD RING_CH-C4HC3_MARCH 118 164 - -
Aip03g04282 336 Pfam RING-variant domain 118 163 IPR011016 GO:0008270
Aip03g04282 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 173 IPR013083 -
Aip03g04282 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 74 324 - -
Aip03g04282 336 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 74 324 IPR033275 -
Aip03g04282 336 SUPERFAMILY RING/U-box 116 168 - -
Aip03g04282 336 SMART ringv_2 117 164 IPR011016 GO:0008270
Aip03g04282 336 ProSiteProfiles Zinc finger RING-CH-type profile. 110 170 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04282 Aip-Chr3 127168209 127171039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04282 102 164 C3H Transcription Factor Family AT2G37950 39.394 2.36e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04282 - - ahf:112734090 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04282 03 127168209 127171039 Aip03g04282 03 127168209 127171039 ECH