Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04280 ATGGACTTGACCTCAAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACCAACGGCACACACAACAACAACCACCACCGCCACCAGTCCACCACCAGGCCTTCTCCGCCGTCCATGGCGGTTATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCAGCATAGGTGGCCATGCACTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCAGCACCACCACCCCCACCTTTTTAAACTGCTTCTACTCCCCGTCCACCGGCACCACCACTGCACCCCCACCGGCGCCGCCGCAACCACTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCAAAGCTCAAGCCCAAGCCAGAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCGCCACCACTGTCTCACGTGCCACCACCACCACCACCATCAGCACCAGGTTCTTACCACTCCTCCGCGCCGCACATGCTCTTAGCTTTAGGCACCGCGTATTCTGCAGTTCCTTCAGATCACGAGCACCAACACCTTCACCGAAACTCCTTCAACAACAGCAACAACTTCTCCCCTGTGGTTCTCAACGCCAACAGTGGCGGCAGTAATAGTAATAGCAGTAAGAACAAGAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTACAGATTCTCTGAGAAATTAGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGAGTTTTGTAATGACATTGGTGTCCCTAGAGGTGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCTTCCTCCTCCTGCTGCTGCTGGAAACAACCACATCAATGATCATGATCAGAAAATCAATGCTACTGCTGCTGCTGATGATAATGCTTCTGCCTTCTTCACTTTCTTCCTCACGCGTTTGCTGCATCAGGTATAA 1107 0.5248 MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNGTHNNNHHRHQSTTRPSPPSMAVISYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSSTTTPTFLNCFYSPSTGTTTAPPPAPPQPLPHRGMSQSTSPSQSSSPSQSPSPMSSPSSPPPLSHVPPPPPPSAPGSYHSSAPHMLLALGTAYSAVPSDHEHQHLHRNSFNNSNNFSPVVLNANSGGSNSNSSKNKRYRTKFSQEQKEKMYRFSEKLGWRMNNKGDDSLVQEFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPLPPPAAAGNNHINDHDQKINATAAADDNASAFFTFFLTRLLHQV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04280 368 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Aip03g04280 368 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 44 321 - -
Aip03g04280 368 MobiDBLite consensus disorder prediction 226 255 - -
Aip03g04280 368 MobiDBLite consensus disorder prediction 312 337 - -
Aip03g04280 368 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Aip03g04280 368 MobiDBLite consensus disorder prediction 150 170 - -
Aip03g04280 368 Gene3D - 239 316 - -
Aip03g04280 368 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Aip03g04280 368 MobiDBLite consensus disorder prediction 115 136 - -
Aip03g04280 368 MobiDBLite consensus disorder prediction 1 56 - -
Aip03g04280 368 SUPERFAMILY Homeodomain-like 240 315 IPR009057 -
Aip03g04280 368 MobiDBLite consensus disorder prediction 171 195 - -
Aip03g04280 368 MobiDBLite consensus disorder prediction 216 264 - -
Aip03g04280 368 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 321 - -
Aip03g04280 368 MobiDBLite consensus disorder prediction 109 199 - -
Aip03g04280 368 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 254 311 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04280 Aip-Chr3 127132092 127133695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04280 60 313 ZF-HD Transcription Factor Family AT1G69600 43.359 3.41e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip03g04280 ZF-HD_dimer 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04280 - - gmx:102660309 276.944