Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04262 ATGGGATCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTAGACAATAAGAAAGATGATCTTCAGCAGCCGCCGCCATCAGAGGATGGACCCGCCGCTGCTGCCAAGAAGCTGCCGCCAAAGCGAGCTTCCACAAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGCATCCGTATGCCGGCTGCAGCCGCTGCCAGGGTGTTCCAGCTGACGCGAGAGCTCGGCCACAAGTCTGACGGGGAGACCATCGAGTGGCTCCTCCAACAGGCTGAGCCCTCCGTCATCGCCGCCACCGGAACCGGTACTATCCCTGCAAATTTCACTTCCCTCAACATCACGCTTAGAAGCTCAGGATCCACCATCTCTTCCCCCTCTCACTACTTCAGAGGCGCCACCGCCACCGCTACACCGTACCTTAGCCACGCAGCCAGCTTCTCCGCCGCTAGGAGCCGCAGCGAATGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGACTCATGTTCTCCGGCAGTGACAATAGTAATAATAATAACAACAACTCTGCTGTCTTGAATTTCAACAACGCTGTTAATGATATTATGCAAAGCAAGCAAGAGGCTCGGGAAGAGCCCTGTAGCGGTGACGGTGGCGGCGGAGGAGATGCTTTGGGGAGGAAGAGAAGGCAAGAGGAGGTGTTCTCACAGCACCAGGGTACTCAGATGATGGGTAGCTACTTGTTACAGTCGAGTTCAGGGTCAATTCCGGCGACTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGCGGCGGTGGAGTTGGTGGTGGCAGTGGTAATAATGGCGGTGACCCAATTTGGGCAATTCCAACGGTTGGTAACAATAGTAGCATGTATAAAGGGGCTATGTCTGGTGGCAGCGGCAACGGTGCCGGCGGCATTCATTTCATGAATTTTGCTTCTCCAATGGCTCTATTGCAAGCTCAACAACTAGGAGGAGGAGGAGGAGGAGGAGGCGGCGGCAGTGCAGTGCTGAGTGAAAGTAACCTGGGAATGCTTGCAGCTCTTAATGCATACAGGCCTATTATGGCTAACGGCAGCGGCGGCCAACATTCACCCCATGGAGATGGAGGTGATCAACAAAGTCAACCCTGA 1143 0.5354 MGSAXXXXXXXXXLLDNKKDDLQQPPPSEDGPAAAAKKLPPKRASTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTISSPSHYFRGATATATPYLSHAASFSAARSRSEWVRNVAVEDYSRRLMFSGSDNSNNNNNNSAVLNFNNAVNDIMQSKQEAREEPCSGDGGGGGDALGRKRRQEEVFSQHQGTQMMGSYLLQSSSGSIPATHASIPATFWMMGGGGVGGGSGNNGGDPIWAIPTVGNNSSMYKGAMSGGSGNGAGGIHFMNFASPMALLQAQQLGGGGGGGGGGSAVLSESNLGMLAALNAYRPIMANGSGGQHSPHGDGGDQQSQP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04262 380 MobiDBLite consensus disorder prediction 1 56 - -
Aip03g04262 380 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Aip03g04262 380 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 34 377 - -
Aip03g04262 380 MobiDBLite consensus disorder prediction 359 380 - -
Aip03g04262 380 Pfam TCP family transcription factor 45 192 IPR017887 -
Aip03g04262 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 377 IPR005333 GO:0003700
Aip03g04262 380 MobiDBLite consensus disorder prediction 197 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04262 Aip-Chr3 126864562 126866337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04262 29 326 TCP Transcription Factor Family AT3G47620 46.246 3.36e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip03g04262 TCP 9.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04262 - - aip:107633962 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04262 03 126864562 126866337 Aip03g04262 03 126864562 126866337 ECH