Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip03g04259 | ATGGCTGATCCTCAGAAAGCTGGTCCTGTTGAGAGGGATATAGAGCAGGCACTTACATCGCTTAAAAAAGGATCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTCTTGTGGTACTCTGGAAAGGAAGAGAAACAACTTAAACTCAGTACTGTTTCAAAGATCATTCCAGGACAACGAACTGCTACATTTCAGCGGTATCCTCGGCCTGAAAAAGAATATCAGTCATTTTCCCTTATATACAATGATAGATCCTTGGATTTGATATGTAAGGACAAAGAGGAGGCTGAGATATGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAATACCAACAGTCAAACGTGGAAATTCGAACCATGTGAAAGTCCATATCCTGGAAGTCCCCGTGCTGGCACACGCAAATCTGCTCCATCAAGTTCACCATTTGACCCCAGATATACCAACGGAGTTGCTTCAGACAATTCTAATCAAAATAGATGGGTAAAGGCTTTCTCGGAAATAATTTCTTATACTGGAGCTAACAAGAGTTCAATTCAAGTCGAGTCGATTCCGAATTCCACTTTATCTCCTGGGTCTGTGGATGAATCAAGTAATCGAAACTCTGCATCTGAGGCAGTTCGAGTTAGTTTATCCAGTGTTGTTAGTTCATCTAGCCATGGTTCTTGTCATGAGGATTTTGAGGCCTTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGTGATGGAATTGTTGGTGGTGGTGTGCGTAGAGTTGGAACCATATCCAATTCTGAGATGGATGCATTCCTCCCTAAGGCTTTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATCAGTTGTGGCCACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAAATATTTAGTTGGGGAGAGGAATCAGGAGGTAGACTTGGACATGGTGTAGAAGTGGATGTTCTTCACCCTAAGCCCATTGAAACTCTTAGCGGCATTAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTTACGTATTCTGGGGATCTTTATACTTGGGGCGATGGTACTCACAACTCTGGCTTGCTTGGGCATGAAAACAATGTCAGTCACTGGATTCCTAAGAAAGTAGGTGGTAGCTTGGAGGGTTTACATGTATCATATGTGTCCTGTGGCCCATGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCTCAATAGCACAAATATTCCTAGAGAAGTGGAAGCTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAATTGTTGAGGTGACACACAAATCTAAGGAATCTCCTACACACTCTACTATTGGAACACTTTTCACCTGGGGTGATGGAGATAAATTGCAACTTGGACATGTTGGTAGTGAACCTACACTAGTTCCTGAGCGTGTGATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCATTGACAACCTCAGGACATGTATATACAATGGGTAGTACAGCTTATGGACAACTTGGCTGTCCTGCTGCTGATGGAAAAGTCCCCACACGTGTTAAAGATCAACTTGCTGACTGTTTTGTGGAAGATATTGCCTGTGGTTCTTATCATGTTGCAGTCCTAACTTCAAAAGCAGAGGTTTATACTTGGGGAAAAGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAATAAACCCACTCTTGTTCAGTTTTTGAAAGACAAGCAAGTGAAAACTGTCGTTTGTGGTTCAAACTTCACTGCTGTTGTGTGTATTCATAAATGGGTATCAAGCACTGACCATTCTCTATGTTCTGGTTGTCGTAATCCATTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCAAAGGATGCACAAACAAGAAATCTATAAAAGCTTCCCTTGCTCCAGACTCCAACAAGCCATATCGGGTTTGTGATGATTGTTACTCTAAACTTAAGAAAGCTTCAGAAACAGTTTCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCATGACAACAGTAAGGTCACTAAATTACAGGAAAAGCTATTAAGGCTTTCATCCTTTGGTTCTTTTACTCAATCAGAAAGCAGTCCATCAAAGCCTCCAGAATCACATGATACCCATGTTTTTCCATCTTTGAATGGAAAATTGCATGTGGGGATTTATGGTCCTATAAAATCATCAAATACTCCTTCTCTGGTATCTAAGAAACATCTTTCAGTTTCTGAGCCTGCTGCAAGAATCTCTTGCCAATCAACATCACCACCTTCTTCAAAGTGTAGCCCACGACAATCTTGTGAAGATAACCATGATGATCCAAAGCTCAAAAATGACATTCTAACTCAAGAAGTCATTGCTTTAAGGGCACAGGTTGAAGAGCTTACTCTTAAGTCGAAAAGTCTAGAGGCTGAACTCGAGCGAACATCACAGCGATTGAAGGAAGTGACAGCAGTAGCTGCAGATGAAGCTGAAAAGTGTAAATCTGCAAAAGAGGTTATAAAATCATTGACTGCTCAGTTGAAGGAAATGGTGCAAGGACCTCCAGAAGGACATAAAGCAAATGCTGACACGATAGCAACTTCCTATGCTGAAACCACTAATAACATTCGAGATCTATCTTTGGTTGAGAACCATACAACAAACACTATAAAGGAATCCAACAGCAATACAGCAAATAGAACATTATCTAATGGTGCCAAAGCACAAAGTGGAAAGGCAGAGCGGGTGGTGCAGGATGAACCAGGTGTGTACATAACTTTGTCTCCGCTGCCAGGTGGAGGTAATGAACTAAAGCGTGTTCGCTTCAGTCGGAGGCATTTCACAGAAGAAGAAGCTGAGAAGTGGTGGGCTGAAAATGGAGTCAAAATACTGGAGCGGCATAACATAGTTTCTTCATAG | 3054 | 0.4188 | MADPQKAGPVERDIEQALTSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALVTRGNTNSQTWKFEPCESPYPGSPRAGTRKSAPSSSPFDPRYTNGVASDNSNQNRWVKAFSEIISYTGANKSSIQVESIPNSTLSPGSVDESSNRNSASEAVRVSLSSVVSSSSHGSCHEDFEALGDVFIWGEGIGDGIVGGGVRRVGTISNSEMDAFLPKALESKVVLDVHSISCGHKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKPIETLSGINIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHENNVSHWIPKKVGGSLEGLHVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLNSTNIPREVEALKGLRTTRVSCGVWHTAAIVEVTHKSKESPTHSTIGTLFTWGDGDKLQLGHVGSEPTLVPERVIALDNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVKDQLADCFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVQFLKDKQVKTVVCGSNFTAVVCIHKWVSSTDHSLCSGCRNPFGFRRKRHNCYNCGLVFCKGCTNKKSIKASLAPDSNKPYRVCDDCYSKLKKASETVSLVQTPSLRSVSLHDNSKVTKLQEKLLRLSSFGSFTQSESSPSKPPESHDTHVFPSLNGKLHVGIYGPIKSSNTPSLVSKKHLSVSEPAARISCQSTSPPSSKCSPRQSCEDNHDDPKLKNDILTQEVIALRAQVEELTLKSKSLEAELERTSQRLKEVTAVAADEAEKCKSAKEVIKSLTAQLKEMVQGPPEGHKANADTIATSYAETTNNIRDLSLVENHTTNTIKESNSNTANRTLSNGAKAQSGKAERVVQDEPGVYITLSPLPGGGNELKRVRFSRRHFTEEEAEKWWAENGVKILERHNIVSS | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 584 | 635 | IPR000408 | - | |
| Aip03g04259 | 1017 | Coils | Coil | 829 | 891 | - | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 480 | 531 | IPR000408 | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 196 | 216 | - | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 131 | 169 | - | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 938 | 959 | - | - | |
| Aip03g04259 | 1017 | Pfam | FYVE zinc finger | 636 | 702 | IPR000306 | GO:0046872 | |
| Aip03g04259 | 1017 | Gene3D | - | 476 | 649 | IPR009091 | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 308 | 359 | IPR000408 | - | |
| Aip03g04259 | 1017 | CDD | PH_PLC_plant-like | 12 | 122 | - | - | |
| Aip03g04259 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 14 | 1011 | - | - | |
| Aip03g04259 | 1017 | Pfam | Transcription factor BRX N-terminal domain | 873 | 896 | IPR027988 | - | |
| Aip03g04259 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 246 | 637 | IPR009091 | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 797 | 826 | - | - | |
| Aip03g04259 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 14 | 1011 | - | - | |
| Aip03g04259 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 958 | 1012 | IPR013591 | - | |
| Aip03g04259 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 453 | 463 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 531 | 580 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 410 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 585 | 632 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 415 | 463 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 480 | 528 | IPR000408 | - | |
| Aip03g04259 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 308 | 356 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 310 | 326 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 376 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 401 | 417 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 417 | 431 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 521 | 539 | IPR000408 | - | |
| Aip03g04259 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 579 | 600 | IPR000408 | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | BRX domain profile. | 958 | 1013 | IPR013591 | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 640 | 702 | IPR017455 | - | |
| Aip03g04259 | 1017 | Gene3D | - | 13 | 130 | IPR011993 | - | |
| Aip03g04259 | 1017 | SUPERFAMILY | PH domain-like | 13 | 121 | - | - | |
| Aip03g04259 | 1017 | Pfam | Pleckstrin homology domain | 15 | 121 | IPR001849 | - | |
| Aip03g04259 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 294 | 304 | IPR000408 | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 246 | 307 | IPR000408 | - | |
| Aip03g04259 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 636 | 711 | IPR011011 | - | |
| Aip03g04259 | 1017 | Gene3D | - | 166 | 370 | IPR009091 | - | |
| Aip03g04259 | 1017 | Gene3D | - | 371 | 470 | IPR009091 | - | |
| Aip03g04259 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 650 | 709 | IPR013083 | - | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 797 | 815 | - | - | |
| Aip03g04259 | 1017 | SMART | fyve_4 | 632 | 703 | IPR000306 | GO:0046872 | |
| Aip03g04259 | 1017 | MobiDBLite | consensus disorder prediction | 938 | 953 | - | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 532 | 583 | IPR000408 | - | |
| Aip03g04259 | 1017 | CDD | FYVE_like_SF | 646 | 698 | - | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 360 | 414 | IPR000408 | - | |
| Aip03g04259 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 415 | 466 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip03g04259 | Aip-Chr3 | 126840263 | 126847025 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip03g04259 | 956 | 1014 | Major Intrinsic Protein MIP | AT1G31880 | 52.542 | 8.02e-14 | 72.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip03g04259 | - | - | lang:109355968 | 1343.56 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip03g04259 | 03 | 126840263 | 126847025 | Aip03g04259 | 03 | 126840263 | 126847025 | ECH |