LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04251	ATGTCCAGCAGAAGATCCTCTTCGGGTGCTCCAACTTCCGCCGGGATGACCGATGCTCAAATCACCGATCTCGTCTCCAAGTTGCAACAACTCATCCCTCAGCTCCGCTCTACGCATTCCGACAAGGTTTCTGCGGCAAAGGTGTTACAAGAGACTTGTAGCTACATTAAGACCTTGCATAGAGAGGTTGATGATCTTAGCGACCGATTGTCCCAGCTTTTGGCCAACACAGACTCAAATACCGCACAAGCAGCCATTATTAGGAGCTTACTTATGTAA	279	0.4875	MSSRRSSSGAPTSAGMTDAQITDLVSKLQQLIPQLRSTHSDKVSAAKVLQETCSYIKTLHREVDDLSDRLSQLLANTDSNTAQAAIIRSLLM	92

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04251	92	PANTHER	TRANSCRIPTION FACTOR PRE	1	92	IPR044293	GO:0006355\|GO:0040008\|GO:0046983
	Aip03g04251	92	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	20	82	IPR036638	GO:0046983
	Aip03g04251	92	CDD	bHLH_AtPRE_like	17	76	-	-
	Aip03g04251	92	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	5	59	IPR011598	GO:0046983
	Aip03g04251	92	Coils	Coil	56	76	-	-
	Aip03g04251	92	Pfam	Helix-loop-helix DNA-binding domain	20	59	IPR011598	GO:0046983
	Aip03g04251	92	Gene3D	-	19	88	IPR036638	GO:0046983
	Aip03g04251	92	PANTHER	TRANSCRIPTION FACTOR PRE6	1	92	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04251	Aip-Chr3	126743440	126744422	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04251	16	91	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G74500	70.130	1.47e-31	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Aip03g04251		HLH	1.3e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g04251	-		-	gmx:100804830	137.502

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g04251	03	126743440	126744422	Aip03g04251	03	126743440	126744422	ECH
	Aip03g04251	03	126743440	126744422	Aip01g02079	01	112378678	112380022	ECH