Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04248 ATGGCTTTCTTCCCAGCAAATTTCATGTTACAAACCCCACATCATCATCACCAAGATGAACATCAACCTCCACCATCACTCAACTCAATCCTAACTTCATGTGCACCTCAAGAGTACCACCACGGAGCAGGAGGAGGAGGGTATCTAGGGAAAAGATCGATGTCATTCTCAGGGATAGAGGTGGGAGAAGTGGAAGGGAATGGAGGAGAGGAAGAGGTGTCAGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGGGCTCTAGGCCTTCAACCTAGACAGATTGCTATTTGGTTCCAAAACAGAAGAGCCAGATGGAAGACCAAGCAATTGGAGAAGGATTATGATCTTCTTAAGCGCCAGTTTGATGCTGTTAAAGCTGATAATGATGCTCTTCAAGCCCAGAATCACAAGCTTCACACTCAGATAATGGCACTGAAAAGTAGAGAACCAACAGAATCAATAAACCTAAACAAAGAGACAGAGGGATCAAGCAGCAACAGGAGTGACAACACTTCAGATATCAAGTTGGATATATCAACAAGGACACCTACTACTACTACTACTACTTCAGCCATTGACAGTCCTCTATCCACTCATCAAAACAACAACAATAACAGCAGAACACTGTTTCCATCACCATCAAATAATGCTGCTGCTGCTGCTGCCACTGCCAGGCCAACAGAAGTTGCACAGCTTTTTCAAACCACTCCACATCATCATCATCATCATCATCATCACATGGTCAAAGAAGAGAGCTTGAGCAACATGTTCTGTGCCATTGATGACCAAACTGGCCTCTGGCCATGGTTAGAGCATCAAAATTTCAATTGA 921 0.4463 MAFFPANFMLQTPHHHHQDEHQPPPSLNSILTSCAPQEYHHGAGGGGYLGKRSMSFSGIEVGEVEGNGGEEEVSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKADNDALQAQNHKLHTQIMALKSREPTESINLNKETEGSSSNRSDNTSDIKLDISTRTPTTTTTTSAIDSPLSTHQNNNNNSRTLFPSPSNNAAAAAATARPTEVAQLFQTTPHHHHHHHHHMVKEESLSNMFCAIDDQTGLWPWLEHQNFN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04248 306 MobiDBLite consensus disorder prediction 64 85 - -
Aip03g04248 306 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Aip03g04248 306 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Aip03g04248 306 SUPERFAMILY Homeodomain-like 73 140 IPR009057 -
Aip03g04248 306 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Aip03g04248 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 306 IPR045224 GO:0003700
Aip03g04248 306 CDD homeodomain 83 139 IPR001356 GO:0003677
Aip03g04248 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 306 - -
Aip03g04248 306 MobiDBLite consensus disorder prediction 174 251 - -
Aip03g04248 306 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Aip03g04248 306 MobiDBLite consensus disorder prediction 174 256 - -
Aip03g04248 306 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Aip03g04248 306 Coils Coil 130 178 - -
Aip03g04248 306 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Aip03g04248 306 Gene3D - 75 144 - -
Aip03g04248 306 SMART HOX_1 81 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04248 Aip-Chr3 126689199 126691032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04248 1 306 Homeobox Transcription Factor Family AT1G69780 57.372 3.48e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip03g04248 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04248 K09338 - gmx:100790840 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04248 03 126689199 126691032 Aip03g04248 03 126689199 126691032 ECH