Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04247 ATGAAGAAACAGGAAGAACAGTGTAACAGAGAATCTAAGAAGAAGGGTCACATTGTAACTTGGACTCAAGAGGAAGATGATATACTGAGAGAGCAGATTGGTATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCACCAGAGGAAGACTTGCTCTTATGTGAGGCTCAAAAATTATATGGCAACAGATGGACAGAAATAGCGAAAGTGGTTCGAGGGAGGCCAGCCATGTTGGAGGCAAATGGATCTGTATGA 339 0.41 MKKQEEQCNRESKKKGHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKLYGNRWTEIAKVVRGRPAMLEANGSV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04247 112 ProSiteProfiles Myb-like domain profile. 65 102 IPR001005 -
Aip03g04247 112 SUPERFAMILY Homeodomain-like 20 104 IPR009057 -
Aip03g04247 112 Gene3D - 72 105 - -
Aip03g04247 112 CDD SANT 20 64 IPR001005 -
Aip03g04247 112 CDD SANT 73 105 IPR001005 -
Aip03g04247 112 ProSiteProfiles Myb-like domain profile. 21 64 IPR001005 -
Aip03g04247 112 Pfam Myb-like DNA-binding domain 21 80 - -
Aip03g04247 112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 68 IPR017930 -
Aip03g04247 112 PANTHER TRANSCRIPTION FACTOR MYB88 10 102 - -
Aip03g04247 112 SMART sant 69 108 IPR001005 -
Aip03g04247 112 SMART sant 17 66 IPR001005 -
Aip03g04247 112 PANTHER MYB PROTEIN-RELATED 10 102 - -
Aip03g04247 112 Gene3D - 6 69 - -
Aip03g04247 112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04247 Aip-Chr3 126661624 126662584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04247 13 102 MYB Transcription Factor Family AT2G02820 83.333 6.53e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g04247 Myb_DNA-bind_6 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04247 K09422 - ahf:112727230 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04247 03 126661624 126662584 Aip03g04247 03 126661624 126662584 ECH