Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04242 ATGGGTAACTGCCTAGATTCCTCAGCAAAAGTGGATGCTGCTCACAGTTCAAGGACTTCCACTTCTGGGATTTCGAAAGCGAGTCGCTCCTCTGCAGCTTCAAGCTTATCCATCTTGTCACACAATGGAACCAGTGATTCTTCATCTTCATCTGCATCTGCTCTTCCCACGCCGCGCTCGGAGGGCGAAATCTTGTCTTCTCCGAATCTCAAGTCCTTCGCATTCAACGAACTGAAGAGCGCCACAAGGAACTTTCGTCCGGATAGTCTCCTTGGTGAGGGAGGATTTGGCTATGTTTATAAGGGGTGGCTTGATGAACACACTTTTACAGCTTCTAAACCAGGATCAGGAATGGTTGTTGCTGTCAAGAAACTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTTAATTACCTGGGACAACTTCACCATCATAACCTGGTTAAGCTAATTGGCTACTGCGTGGAGGGGGAAGATCGGCTGTTGGTGTATGAGTTCATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAGCCACTTTCTTGGTCACTTAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGTCTAACTTTTCTTCACAATGCCAAATCACAAGTCATATACCGCGATTTTAAAGCTTCGAATATCCTACTAGATGCTGAGTTCAATGCAAAACTCTCTGATTTTGGCTTAGCCAAGGCTGGTCCTACTGGAGATAGAACTCATGTCTCTACTGAAGTTATGGGTACTCGTGGATATGCAGCACCTGAATATGTAGCAACAGGGCGGTTGACAGCCAAAAGTGATGTATATAGCTTTGGGGTTGTATTGCTTGAGCTTTTGTCTGGAAGACGTGCTGTTGATAGAACAAAAGCCGGTGTCGAGCAGGACCTTGTAGACTGGGCAAAACCGTATCTAGGTGACAAAAGAAGACTATTTAGGATTATGGACACCAAGCTTGAGGGTCAATACCCACAGAAAGGAGCCTACATGGCTGCTACTCTTGCTTTAAAATGCCTTGATCGTGAAGCCAAGTTAAGGCCGCCAATGACAGAGGTTTTAGAAACCCTCGAGCAGATAGAAGTCCCCAAAACTGCAGCGCGAAACTCTCAATCAGGGCAGAACAGAGTACATGTTCCTCCAAGCCCAAGGAAGTCTCCTGGACAGAATCTGTCCCCCATGAATGTTACTCGAACTTCATACCCATTGCCGCCTTGCCGAGAATCCCCTCATGTACACTAA 1266 0.466 MGNCLDSSAKVDAAHSSRTSTSGISKASRSSAASSLSILSHNGTSDSSSSSASALPTPRSEGEILSSPNLKSFAFNELKSATRNFRPDSLLGEGGFGYVYKGWLDEHTFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGEDRLLVYEFMPKGSLENHLFRRGPQPLSWSLRMKVAIGAARGLTFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTEVMGTRGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQDLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAYMAATLALKCLDREAKLRPPMTEVLETLEQIEVPKTAARNSQSGQNRVHVPPSPRKSPGQNLSPMNVTRTSYPLPPCRESPHVH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04242 421 PANTHER OS01G0588500 PROTEIN-RELATED 18 419 - -
Aip03g04242 421 Gene3D Phosphorylase Kinase; domain 1 61 170 - -
Aip03g04242 421 MobiDBLite consensus disorder prediction 1 65 - -
Aip03g04242 421 MobiDBLite consensus disorder prediction 371 421 - -
Aip03g04242 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Aip03g04242 421 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 18 419 - -
Aip03g04242 421 MobiDBLite consensus disorder prediction 10 65 - -
Aip03g04242 421 ProSiteProfiles Protein kinase domain profile. 85 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04242 421 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
Aip03g04242 421 CDD STKc_IRAK 91 368 - -
Aip03g04242 421 SUPERFAMILY Protein kinase-like (PK-like) 56 365 IPR011009 -
Aip03g04242 421 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Aip03g04242 421 Pfam Protein tyrosine and serine/threonine kinase 89 365 IPR001245 GO:0004672|GO:0006468
Aip03g04242 421 MobiDBLite consensus disorder prediction 371 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04242 Aip-Chr3 126633617 126636519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04242 63 365 Glycoside Hydrolase AT3G07070 53.922 1.01e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip03g04242 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04242 - - gmx:100809778 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04242 03 126633617 126636519 Aip03g04242 03 126633617 126636519 ECH