Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04235 ATGTATATGCATCAGGATCCAAAGATTGAATCCACTACTGAGGGGGGAATGGGAAAATTGGAAGTATTATTGAGAAATGGTGCAAATGATGAAGATTCATCATCATTAGTGCAAAAGGAGTACTTGTTTGACATTATCCTTCAACAACAAAAGCAAGAAGCTACCACCAAAGAAGGCATCAATAATAATAATGAAGATAGTGATGAAGAACTTGTGTCACTCTCTCTAGGAGTCTCATCATCAGCTTCCAATAATAGAGAGGAAAAACTACTCACCGAGATGTGGCCACCGAGTAAAGTTCTGAAGACAACAAAAAATAATGGCGAAGGAAATGAAGCATCTCATCATCATCACCATAATACTCGCCTCAAGAAGACTAGGGTTTCTATAAGAGCCAGATGTGATACACAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCTCGTTCATACTACCGATGCACTGTCTCTTCATCTTGTCCCGTAAGAAAACAGGTTCAAAGATGTGCTCAAGACATGTCAATCCTGATTACAACCTATGAAGGAACTCACAACCATCCACTTCCTTCTTCAGCCACTCCAATGGCGTCTGCAACTTCAGCCGCCGCTTCCGTTCTTCAATCTTCCTCCTTGTCCTCCTCCTCGTCACAACAAGGCCTTGTACCCAATTCAGAAACAACAACCATTATCAACCCTAATAATAATACTACCCTAATAAGACCACAACAATTCTACTTGTTCAACTCTTCCATGATCTCAAATAATAACTTTCACCCCACAATAACTCTTGACCTCATTACTAAACCTCCAACTTCATCATCATCTTCCATACCAAAGTATTCACCAACAAATCTTGATTTTTCCTCAACTACTACCACTTTCTCTCCATTGCAGTATAGCACTCAAGACTCATCATCGTCTCGTTATTATTGGAACCTTAATAATAATAAGAATGGAAAGCAACCACTGATTCAATATCATCAAGGGAATTATTATCCCTACCAACAAAATTGCATGCCCATTATTTTTCAACAACCTTTACATGCAGATTGTTATGCATCCTCTGCTCTTAATAATAACCAACAAGGAAACATCACATTCTCATTGTTAACCTCACAACCGTCTAAAGCCCAGTCGCCACCGCCGTCGCCGGGGTTTGCTGGTCGTGACTACCACCACCGTCGCGTGGTCTCTTCCCCAGTTCGCCCGTTCATTCATCTCAGCCTAGCCCCTTCTGAAGCATTCCCAGGCTCCCAGCGTCCCCGTGTTCCTCAGGCTGCCACCGTCGTCGCCTGCTCCTCAGCACCGCCGCTTCGTCTTCGCTGGCCTCTTCCTTCGTCGTTGCTGGTCTTCGCTTCGTCAGCACCCAGCACAGGATGA 1413 0.4331 MYMHQDPKIESTTEGGMGKLEVLLRNGANDEDSSSLVQKEYLFDIILQQQKQEATTKEGINNNNEDSDEELVSLSLGVSSSASNNREEKLLTEMWPPSKVLKTTKNNGEGNEASHHHHHNTRLKKTRVSIRARCDTQTMNDGCQWRKYGQKIAKGNPCPRSYYRCTVSSSCPVRKQVQRCAQDMSILITTYEGTHNHPLPSSATPMASATSAAASVLQSSSLSSSSSQQGLVPNSETTTIINPNNNTTLIRPQQFYLFNSSMISNNNFHPTITLDLITKPPTSSSSSIPKYSPTNLDFSSTTTTFSPLQYSTQDSSSSRYYWNLNNNKNGKQPLIQYHQGNYYPYQQNCMPIIFQQPLHADCYASSALNNNQQGNITFSLLTSQPSKAQSPPPSPGFAGRDYHHRRVVSSPVRPFIHLSLAPSEAFPGSQRPRVPQAATVVACSSAPPLRLRWPLPSSLLVFASSAPSTG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04235 470 Pfam WRKY DNA -binding domain 140 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g04235 470 Gene3D WRKY domain 124 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip03g04235 470 SUPERFAMILY WRKY DNA-binding domain 132 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip03g04235 470 MobiDBLite consensus disorder prediction 223 245 - -
Aip03g04235 470 ProSiteProfiles WRKY domain profile. 134 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g04235 470 SMART WRKY_cls 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g04235 470 MobiDBLite consensus disorder prediction 103 127 - -
Aip03g04235 470 PANTHER WRKY TRANSCRIPTION FACTOR 72B 82 339 - -
Aip03g04235 470 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 82 339 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04235 Aip-Chr3 126571286 126575248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04235 33 276 WRKY Transcription Factor Family AT5G15130 45.802 2.42e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip03g04235 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04235 - - adu:107481098 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04235 03 126571286 126575248 Aip03g04235 03 126571286 126575248 ECH
Aip03g04235 03 126571286 126575248 Aip01g02067 01 111448647 111453955 ECH