Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04231 ATGTTAGTACTATTACTACGCACTGCGGCATCTGGTGCTGTCACATATCCATGCAAATGCAAGGCACCACCACTAAGAACAAGAACCCGAACCCTGCTGCATCTTTTCCTTCCAATTCATCCCAACACCAACATCAATTCCACCATCCTTTGTTCTTCATCCTCACTCAATGATGACTCATTTTCTAACCCTAAACCAACAACCAAGTTGGGTTACACTCCTCCAGAGGAGCTCTTTGGCCTCGACGTTGAACTCAACCCAAGCAAAACTAACTCTCAGACACAAGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAAAGAGCTTCCTTGTCCGAGTTGCCGGGGAAGGGGTTATACTCCGTGTACAGAATGTGGAATAGAAAGATCAAGATCAGATTGTCCAAAATGTAACGGAAAGGGTATAGTGACTTGCCACCAGTGCTCTGGAGAATGTGTTATATGGGAAGAATCCATTGATGAGAAACCGTGGGAGAGAGCCCGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTGGGATTAAAGATTAGTCGTTCATTGAAAAGTCTTAATGCGAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCGCAAAGAGTGGCTGCTATTAAGAGAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCAAGACTATGAAAGCTTTCTTTAGTGATCCTATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGTCAAAATTGTGGACGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTTGGTTGACCGGCGATTCACATGCAAACTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGACAAGCCACGGCAATGGTAGAGTTATAAAACACAATAGGTGTAAAATATGTCGCCAATATGGCCATAACCAGAGGACATGCCCTCAAGTTGTTCCCAGCAAAAGAAGGGACACTCTCTTGAATAAAGCATACAAGTTAGAAACTTTAGCCGTTCCTTCGGAAGAATTCAGGTTTCTCTGCATCAGTTCTCTAAACATTGAGGATTTTAGGAGAAGTCCTAATGCTGTTGGGGAAGATGAAGGGACTGGATGGAAGTTGAAGTTTGATAGCTCGGTGGCTCCTGTGGCTAGGATGGGGTTAGAGCAATATCATATGCGCGAGCTGCCTCTTCTTGTGTACCTTTTGGACAAGACATTGAGCACGTATAAAAGGGAATGGAGAGAAATGGCATAA 1386 0.4372 MLVLLLRTAASGAVTYPCKCKAPPLRTRTRTLLHLFLPIHPNTNINSTILCSSSSLNDDSFSNPKPTTKLGYTPPEELFGLDVELNPSKTNSQTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCHQCSGECVIWEESIDEKPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKRAKGTIAARKHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLVDRRFTCKLCGEKGHNRRTCNKLKTSHGNGRVIKHNRCKICRQYGHNQRTCPQVVPSKRRDTLLNKAYKLETLAVPSEEFRFLCISSLNIEDFRRSPNAVGEDEGTGWKLKFDSSVAPVARMGLEQYHMRELPLLVYLLDKTLSTYKREWREMA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04231 461 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 43 366 - -
Aip03g04231 461 SUPERFAMILY Retrovirus zinc finger-like domains 332 364 IPR036875 GO:0003676|GO:0008270
Aip03g04231 461 ProSiteProfiles Zinc finger CCHC-type profile. 287 302 IPR001878 GO:0003676|GO:0008270
Aip03g04231 461 SMART c2hcfinal6 344 360 IPR001878 GO:0003676|GO:0008270
Aip03g04231 461 SMART c2hcfinal6 313 329 IPR001878 GO:0003676|GO:0008270
Aip03g04231 461 SMART c2hcfinal6 286 302 IPR001878 GO:0003676|GO:0008270
Aip03g04231 461 SUPERFAMILY Retrovirus zinc finger-like domains 284 330 IPR036875 GO:0003676|GO:0008270
Aip03g04231 461 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 43 366 - -
Aip03g04231 461 Gene3D - 279 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04231 23 358 C2H2 Transcription Factor Family AT5G20220 61.919 4.78e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04231 - - gmx:100800156 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04231 03 126539025 126543899 Aip03g04231 03 126539025 126543899 ECH