Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04230 ATGGCATCAAAAAATGAAATTTTGTTGTTGTATTTTGTGTGTTTGGGATTAACATGCATTGAAGCTAACATCCTTGAGAACGATAAGTACTGGACGAACCATGAACAAGAGTTCGATGGTTACTGGAAGCAAAGAGCCGAGATTGCTAAAACTGATAACCTAAAAGCCTATTTCCCTGATCCCTATGCCGTCTCTGGAAACTTCACCTCTGCCATTAGTGACGACATTATTGGAAAGAGTAGTGGAGGAAGAAGGAAGTTGAAAGGAAAGAATAGAGGAGCTGCATGCATGGCGACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGATTGTGTTCAGGGATTCGGAAGAAACACCATTGGAGGAAAAGGAGGAAAATTCTACGTCGTCAATGACTCTTCAGATGGTGACTTGCTGTCTCCGAAACCAGGCACTATCCGCCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGAAGCATGGTGATCACGCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGGGGATTCGATGTCCAAATTGCAAACGGTGCTGGCATCACCGTCCAGTTCATCAAGAACGTCATTATCCATGGCATCAAGGTCTACAACACGGTGGTCAAGACAGGTGGCATGATTAGGGACTCCGAAACTCATTACGGATTTCGGACACAGAGTGATGGTGATGGTATCTCCATCTTTGGCGCAAGCAACATCTGGATCGACCATGTTTCCATGAGAAATTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCCAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGGGCCAGACATGGTTTTGTCCATGTTGTCAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCATCATCAGTGAGGGTAACAGGTTCATTGCCCCTGAAAACCGCTTTGCCAAAGAGATAACCAAGAGAGAATACGCAGAAGAAAGCATATGGAAGAACTGGCAATGGAGATCAATCAATGATGAATACTTGAATGGAGCATTCTTCGTTCAATCCGGGGCTGAATTGAAGAACAGACCATTCTCAAGGGAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCGGGTGTTCTTCCATGCAAAATTGGCCACCCATGCTAG 1350 0.4674 MASKNEILLLYFVCLGLTCIEANILENDKYWTNHEQEFDGYWKQRAEIAKTDNLKAYFPDPYAVSGNFTSAISDDIIGKSSGGRRKLKGKNRGAACMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTIGGKGGKFYVVNDSSDGDLLSPKPGTIRHAVTRTEPLWIIFSRSMVITLQQELIMASNKTIDGRGFDVQIANGAGITVQFIKNVIIHGIKVYNTVVKTGGMIRDSETHYGFRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPENRFAKEITKREYAEESIWKNWQWRSINDEYLNGAFFVQSGAELKNRPFSREDMITAKPGTYVGRLTRFAGVLPCKIGHPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04230 449 Gene3D - 99 442 IPR012334 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Aip03g04230 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Aip03g04230 449 Pfam Pectate lyase, N terminus 37 87 IPR007524 GO:0030570
Aip03g04230 449 SMART amb_all 174 371 IPR002022 -
Aip03g04230 449 PANTHER PECTATE LYASE 6 449 - -
Aip03g04230 449 PANTHER PECTATE LYASE 18-RELATED 6 449 IPR045032 GO:0030570
Aip03g04230 449 Pfam Pectate lyase 183 365 IPR002022 -
Aip03g04230 449 SUPERFAMILY Pectin lyase-like 100 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04230 Aip-Chr3 126534008 126535975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04230 38 449 Polysaccharide Lyase AT1G14420 60.094 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04230 K01728 - gmx:100798579 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04230 03 126534008 126535975 Aip03g04230 03 126534008 126535975 ECH
Aip03g04230 03 126534008 126535975 Aip01g02059 01 110787194 110790019 ECH
Aip03g04230 03 126534008 126535975 Aip10g02949 10 125092826 125097154 ECH