Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04228 atgagccctaatccttcCATAGATCAGCCACCTCCAACCCCCACCACCTCCTGTGCCCCTGATTCCCTCTTCCACCACCACCTAAGCTGCCCCTCCTCTCCTTGCCCCATCCCCCTCCCTCTCCACCTTTGTCCTTTTCTTCTTCCTTCTTCCTTCGTCCTTTTTCCCTTCCATTCTTCCTCGGCGCCTGCCTCCATCACCGCCGCACAGCCGTGCCTCCGTCAGCCACCATCAACGCCGGCGAAGCTACTAGAAGCTTCCACCACCATGGCCACTTTCACCTTCTCCATGTCCCTATCGTCTTTTCGTTCCTTTGTGCCCATTTGGCACCACCGTGCTCCCAACCACTGGAGCTTGGGCCTCTTTGACGTCACGGAGCGTATGAGGTTGCCGCCGCCTCTCAAATGCTCCGCCGCAGAACCCGACCAGGAAACCAAGGTTCCCGCCACTTCCTCCGGCTCCGGCGAATGGACTCATAAGCTGACCGCGTGGATCGCCGGGATCGGCTTCCTTGAAACCTCGTACCTTACCTACCTGAAGCTCATCGGTTCCGAAGCATTTTGCCCTATCGGTGGTTCTCCCTGCGGCGACATACTCAACAGTGATTACGCGCTTATTTTCGGTGTTCCTCTTCCTTTGGTTGGGATGGTGGCGTATGGCTTGGTTGCGGCGCTTGGTCTGCAATTGGCCACAAAGAAGATGTTGCCTTTTGGGATTGGCAGCGTTGACGCCTATTTCCCTGATCCCTTTGCCATCTCCGGCAACTTCACCTCCGCCATTAGCTGGGACATTCTTGGAAAGAATGGAGGAAGAAGGATGTTGAAAGGAAAGAACAAAGGAGCTCCATGTGTGGCGAGCAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCTGATAACCGCCAAAAGCTTGCGAATTGTGTTATGGGATTCGGCAGAAACACGTACGGAGGAAAAGGAGGAAAATACTACGTGGTCACCGACCCTTCCGATGATGACTTGCTGGCTCCCAAGCCCGGCACTCTTCGCCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGCAGCATGGTGATCACCCTCCAGCAAGAGCTCATCATGGCTGGCAACAAGACCATTGATGGAAGAGGCTTTGATGTCCACATTGCACACGGTGCTGGCATCACCATCCAGTTCATCAAGAATGTCATCATCCATGGAATCAAGGTCTACAACATCGTCGTCAAGGACGGTGGCATGATCAGGGACTCCGAGAAACATTACGGCTTCAGGACAAAGAGTGACGGTGATGGTATCTCCATCTTTGGCTCTAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCACTACACTGACCACAACGAGGTGATGCTGTTTGGAGCCAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGAGCCAGATATGGTTTCGTCCACATTGTGAACAATGATTATACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCCTCATCAGCGAGGGTAACAGGTTCATCGCCCCCCCGAACCGGTTTGCCAAGGAGATCACCAAGAGAGAATACACAGAAGAAAAAATATGGAAGGACTGGCAATGGAGATCAATCAATGATGAGTACTTGAATGGAGCATTCTTCATTCAATCAGGACCTGAACTGAAGAACAGGCCATTCTCAACAAAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGACAGCTAACACGCTATGCGGGTGTTCTTCCATGCAGAATTGGACATCCCTGCTAG 1911 0.5207 MSPNPSIDQPPPTPTTSCAPDSLFHHHLSCPSSPCPIPLPLHLCPFLLPSSFVLFPFHSSSAPASITAAQPCLRQPPSTPAKLLEASTTMATFTFSMSLSSFRSFVPIWHHRAPNHWSLGLFDVTERMRLPPPLKCSAAEPDQETKVPATSSGSGEWTHKLTAWIAGIGFLETSYLTYLKLIGSEAFCPIGGSPCGDILNSDYALIFGVPLPLVGMVAYGLVAALGLQLATKKMLPFGIGSVDAYFPDPFAISGNFTSAISWDILGKNGGRRMLKGKNKGAPCVASNPIDRCWRCDPHWADNRQKLANCVMGFGRNTYGGKGGKYYVVTDPSDDDLLAPKPGTLRHAVTRTEPLWIIFSRSMVITLQQELIMAGNKTIDGRGFDVHIAHGAGITIQFIKNVIIHGIKVYNIVVKDGGMIRDSEKHYGFRTKSDGDGISIFGSSNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARYGFVHIVNNDYTHWEMYAIGGSKNPTLISEGNRFIAPPNRFAKEITKREYTEEKIWKDWQWRSINDEYLNGAFFIQSGPELKNRPFSTKDMITAKPGTYVGQLTRYAGVLPCRIGHPC 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04228 636 SMART amb_all 361 558 IPR002022 -
Aip03g04228 636 Pfam Vitamin K epoxide reductase family 163 232 IPR012932 -
Aip03g04228 636 SUPERFAMILY Pectin lyase-like 287 627 IPR011050 -
Aip03g04228 636 CDD VKOR_1 165 227 IPR044698 GO:0016491
Aip03g04228 636 PANTHER PECTATE LYASE 18-RELATED 242 636 IPR045032 GO:0030570
Aip03g04228 636 Gene3D - 286 629 IPR012334 -
Aip03g04228 636 Pfam Pectate lyase 375 552 IPR002022 -
Aip03g04228 636 Gene3D VKOR domain 148 243 IPR038354 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 333 358 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 513 532 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 433 454 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 309 326 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 577 601 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 607 630 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 535 554 IPR018082 -
Aip03g04228 636 PRINTS Pollen allergen Amb family signature 369 385 IPR018082 -
Aip03g04228 636 PANTHER PECTATE LYASE 242 636 - -
Aip03g04228 636 SMART vkor_5 155 263 IPR012932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04228 Aip-Chr3 126518588 126523643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04228 241 636 Polysaccharide Lyase AT1G14420 59.611 1.96e-174 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04228 K01728 - gmx:100798579 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04228 03 126518588 126523643 Aip03g04228 03 126518588 126523643 ECH