Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04218 ATGGAAGAGGCTATCAACCAACTCTATGCTCCTCATCTCCGCCAACATAATCAAACCCTTTTTCACCCCTCTCAACCTTCTTTCCAAGGATCAAAATCAGTGGTGAACTTCGAGAGTGTTAGTGTTAGTGGCAGCGAGATCAGAAATGGGCCCTTGTTATTGGAAGACAACACTTTTGGCGCTGATGATGAAGACTATGACTGTTGCTTGCAGCAACAAGGTAGCAGCAGTTACAAGAAGAAGAGGCTGAGAAGCGACCAAGTTGAGTTTCTGGAGAAGAGTTTCGAGGTGGACAACAAGCTTGAACCCGAAAGAAAGTTCCAACTCGCAAAGCAGATTGGCTTGCATCCAAGGCAAGTTGCCATATGGTTCCAGAATCGAAGAGCAAGGTTCAAGACCAAGCGAATTGAGAAAGATTTTGCTGCATTGAAACAAAGCTTTGATACCCTTCAACAACAATATGATCTTCTCCTTCGTGACAATCTCAACTTACAACAGCAGGTTGATTCATTGAAGAAGAGAGTAATTCCCAGAGAAGAAGAAGGTTTGGATGATGGTGTGAATTCAAAGCATATAATAGAGGAGGTGGGTGTGAATATGATCTCCAAAGTGGAAGATGCCACAACCACCAATTCATCAAAAAGCGATGTGCTTGATTCTGATAGCCCAAACTACACTGATGGAAACCATTCCTCCTCACCTCATCATGATTTCTCTTCTCATCATCAACAACATAATAACAATAACAACCTCTTGAAAACCCTCTCTTTCTTACCAAAGATTGAAGATGATGATGATCATGACAACACTTGCAATTTTGGGCTCCCTGTTGTTGATGAAGATCAAGCCTTTGATTTTTGGTCTTACTGA 870 0.4195 MEEAINQLYAPHLRQHNQTLFHPSQPSFQGSKSVVNFESVSVSGSEIRNGPLLLEDNTFGADDEDYDCCLQQQGSSSYKKKRLRSDQVEFLEKSFEVDNKLEPERKFQLAKQIGLHPRQVAIWFQNRRARFKTKRIEKDFAALKQSFDTLQQQYDLLLRDNLNLQQQVDSLKKRVIPREEEGLDDGVNSKHIIEEVGVNMISKVEDATTTNSSKSDVLDSDSPNYTDGNHSSSPHHDFSSHHQQHNNNNNLLKTLSFLPKIEDDDDHDNTCNFGLPVVDEDQAFDFWSY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04218 289 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
Aip03g04218 289 SMART HOX_1 76 138 IPR001356 GO:0003677
Aip03g04218 289 SUPERFAMILY Homeodomain-like 67 134 IPR009057 -
Aip03g04218 289 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Aip03g04218 289 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Aip03g04218 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 182 IPR045224 GO:0003700
Aip03g04218 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 200 289 IPR045224 GO:0003700
Aip03g04218 289 MobiDBLite consensus disorder prediction 207 246 - -
Aip03g04218 289 CDD homeodomain 79 135 IPR001356 GO:0003677
Aip03g04218 289 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 24 182 - -
Aip03g04218 289 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 200 289 - -
Aip03g04218 289 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Aip03g04218 289 MobiDBLite consensus disorder prediction 207 233 - -
Aip03g04218 289 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Aip03g04218 289 Coils Coil 147 174 - -
Aip03g04218 289 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Aip03g04218 289 Gene3D - 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04218 Aip-Chr3 126353843 126355152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04218 79 276 Homeobox Transcription Factor Family AT3G01470 40.097 1.08e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip03g04218 Homeodomain 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04218 - K09338 qsu:112000549 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04218 03 126353843 126355152 Aip03g04218 03 126353843 126355152 ECH