Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04216 ATGACAATGGCTGATGATGCAGTTTTGATGAAGCAAATGATAATGAAAATGACAACTATGGATGGATACCGACATACTGTGTCACGGGAATCTGGATCATTATCCCCTAAAGCCATAGGATTCGATACAAAGCTGACACTAAAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTTGCATACAACGCTCTGATGGAACATTTGGTAACGTTGTTCTTGTATCGACGTGTGAGCTATGTCTGCAGGTTTATGAAATTCGATTCCATTGGATTGTTCCAGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAGTTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGTGTTGGATAATTTTTGATGAAGCTGATAGGTATGGCTTGCATCTATTGATGCTATAG 591 0.4078 MTMADDAVLMKQMIMKMTTMDGYRHTVSRESGSLSPKAIGFDTKLTLKKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTCIQRSDGTFGNVVLVSTCELCLQVYEIRFHWIVPGYVMGGENRSKEKARLRKGISVLIATPGRLLDHLKNTSSFLYTKLCWIIFDEADRYGLHLLML 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04216 196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 196 IPR014001 -
Aip03g04216 196 SMART ultradead3 51 196 IPR014001 -
Aip03g04216 196 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 56 188 - -
Aip03g04216 196 Pfam DEAD/DEAH box helicase 57 189 IPR011545 GO:0003676|GO:0005524
Aip03g04216 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 189 IPR027417 -
Aip03g04216 196 PANTHER RNA HELICASE 56 188 - -
Aip03g04216 196 Gene3D - 5 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04216 Aip-Chr3 126285335 126289296 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04216 33 187 Eukaryotic Initiation Factors Gene Family AT3G19760 27.950 2.96e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04216 K14806 - gmx:100805157 237.269