Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04192 ATGGTATCTTCTAGAGGAAAAGCCTCGGGGCAACCCCACGTTGCGATTGATAATGCTGTTCGGGTGACTCAAGATGATGCCGTAAATTACCTGAAGGCCGTGAAGGAAGCGTTTCATGATAAGCCGGAAAAGTATGCTGACTTTTTAGAAGTAATGAAAGATTTCAGGGCTCGAAGAACTGATACGGATGGTGTCATAGCAAGAGTGAAGGAGATATTTAAAGGGCATAGAAATCTAATTGTAGGGTTTAACAACTTCTTGCCTAAGGAACATGAAATTGCACTTCCATGGGAGGATGAACAACCTCAGCAGAATAAGCCTGTTGATTTTGTAGGCAAGGTCAAGGTAAGTTTTTGA 357 0.423 MVSSRGKASGQPHVAIDNAVRVTQDDAVNYLKAVKEAFHDKPEKYADFLEVMKDFRARRTDTDGVIARVKEIFKGHRNLIVGFNNFLPKEHEIALPWEDEQPQQNKPVDFVGKVKVSF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04192 118 Gene3D Paired amphipathic helix 26 88 IPR036600 GO:0006355
Aip03g04192 118 SUPERFAMILY PAH2 domain 21 89 IPR036600 GO:0006355
Aip03g04192 118 ProSiteProfiles PAH domain profile. 20 90 IPR003822 GO:0006355
Aip03g04192 118 PANTHER SIN3B-RELATED 21 114 IPR039774 GO:0003714
Aip03g04192 118 Pfam Paired amphipathic helix repeat 43 87 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04192 Aip-Chr3 125962456 125965400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04192 22 115 WRKY Transcription Factor Family AT4G12020 50.000 5.15e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04192 PAH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04192 K11644 - ahf:112791856 198.749