Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04190 ATGGTTGAAGAGTTTTTAGAAAAGACGTTGCTGTGGAAGGGTACTCTGCAGTTCGTGCACTTCACAATCACTATCAAAAGACCAATGGTATCTTCTAGAGGAGAAGCCTCCGGGCAACCCCAGGTTACGATTGGTAATGCTGTTCAGAAACTGACCCATGATGATGCCGTAAAATACCTGAATACCGTGAAGGATGCGTTTCATGATAAGCCGAAAAAGTATGCTGACTTTTTAAAAGTAATGAAAGATTTCAAGGCTCAAAGAATTGATACAGCGGGTGTCATAGCAAGAGTGAAGGAGCTATTTAAAGGGCATAGAAATCTAATTTTAGGGTTTAATACCTTCTTGCCTAAGGGATATGAAATTACACTTCCGTTGGAGGATGAACAACCTCAGCAGAAGAAGCCTGTTGAATTTGTTGAAGCTATAAATTTTGTGGGCAAGATCAAGAGTCGGTTTCAAGGCGATGACCGTGTGTATAAGTCGTTTCTTGATATATTGAATATGTACAGAAAGGAAACCAAGACTATCTCTGAGGTTTACTTAGAGGTTGCTGCACTTTTCCGTGACCATGAAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATAATTCAGTATCAGCTTCAACTCATTATACTTCTGCCCGAAATTCTATACTTCGTGATAAGAGCTCTGCAATGCCAACTATTAGACCAGTGCATGTTGAAAAGAAAGAAAGGACCATGGCTTCTCATGGTGAATGTGATCTCAGCGTTGAGCATCCTGATCAAGAACTCGATAAAAGTTTGGTGAGGGCTGATAAGGACCAGAAAAGGCGTGCTGAAAAGGAAAAGGACCGTCGAGAAGAGAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATGTTGATTGTAATAGAGACAGTTTATCCCACAAGCGAAAATCTGGTCGTAGGACTGATGACTCTGGTGCTGAACCATTCCATGATGAAGATGAAAATTTTGACCTGCGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGTAGTCAAGTCGTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGAACTCCTGAGGTTTACCAAGAATTTTTGAAGTGTCTACATATATACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAATGCGAGAAGAATGAAGGATTTCTTGCTGGCGTCATGAACAAAAAGTCCTTGCGGAATGAAGGACATGGATTGAAAGCATTGAAGGTAGAGGAGAGGGATAGAGATCGAGACCGTGATAAGGTTGAAGGGGTGAAAGAAAGGGATAGAGAGTGCCGAGAAAGGGACAAATCCACTGCAGCTGCAAATAAAGATGTTTTCGTTCCTAAGATGTCTCCATATGCCACCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAATTGTGAACAATGCACTCCCAGTTACCGTCTTCTTCCAAAAAATTACCCAATACAAATACCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGACCACTGGGTGTCTGTCACTTCAGGAAGTGAAGATTATTCCTTTAAACACATGCGAAAAAATCAGTTTGAAGATATTCTGTTTAGATGTGAAGATGACAGGTATGAACTTGATATGCTGATCGAGTCTGTAAATGTAGCAATCAAGCGAGTTGAAGAGCTCTTGGAAAAGATTAATACTAATATTATAAAGGGAGACAGTCCAATTCGAATTGAGGAACACTTCACAGCTTTAAATCTTAGATTGATTGAACGATTATATGGTGACCATGGGCTTGATGCAATGGATTGGCTAAGAAAGGATGCATCTCGCTTTTTGCCTGTCATATTAAACCGCTTGAGGCAGAAACATGTAGAATGCGTAAGGATGAGTGTTGCTTGTAAACCAGAGTGGGCTAAAGTACATGCTGCGAATCATCATAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAGGATAAGAAAAGCTTGAGTAATAAAGCCTTACTGACAGAAATAAAAGAAATTAGTGAGAAGAAATGGAAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTCTTCTTCCAAACTTGGAATTTGAGTATCCTGATCCAGAGATCCATGAAGATTTGTATCAGCTAATAAAATACTCCTGTGGAGAACTTTGTACAACTGAACAGATGGATGAAGTTTTAAAGATTTGGACTACTTTTTTAGAGCCCATGCTTGGTGTTCCTTCTCGACCCCAGAGTTGTGAAGATACAGATGATATTGTTAAGGCTAAGAGCAATTCTTCTAGAAGTGGCACTTCAAATGATTCTAATGGTAATGATAGTCATGGTTTTGGTGCGACTCCTAATAATTTAAACACTAACGAAAACAGGGATGAGAGTATTCCATTAGCACAGTCAAATTCTTTTAAAGAATGGTTAGCAAATGGGGATAGTGGAGTTAAAGAGAGTAGTCATCTTGATTCAGACCGCACTTCATACAAGATTGAAACTTTGGGCAGTAATACACAGCAGGGTAAAATACATATGATTGCATCCATCCCTGATGAAGTATCAAGAATCAATAAACAAGACCATCCGATTGAAAAGTTGGCGAGTGCTAATATCTCAGTGGCCTCTGGAATGGAGCAAAATGGAAGAACTAACATAGATAACACATCAGGACTTACTTCACCTCCATCTGGTCCTGGTAATGTTTCTGGCGAGGGAGGGCTTGGTTTACCTCCATCAAAGCTCGCTGATTCTACAAAACCTGTTACATCTTCAAATGGGGCTATTACTGAAGGCACCAAAGTTCACCGACCCAAAGATGAATCAGTTGGACACTTCAAAAGTGATAGAGAAGAGGGAGAATTATCTCCCAATGGAGACTTTGAAGAGGACAACTTTGCAGTTTATGGAGAAGCTGGTTTGGAGGGAGTGATTGAAGGGAAGGATAGTAGTACAAGCCGACAATACCAAAGTAGACATGGAGAAGAAGTTTGTGGTGAAGCCGGAGGAAGAAATGACCTTGATGATGAAGGTGAGGAAAGTCCTCATAGGTCGTCAGAGGACAGTGACCATGCTTTGGAAAATGGTGATGTTTCTGGTAGTGAGTCTGCTGATGGTGACGACTTTACAAGAGAAGAAAAAGAGTGTGGGGATCAAGAACACAATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGAAACGGCTGATGGCAATGATGTTGAGGGAGATAGTTCCTTGTTACCAATTTCAGAACACTTTCTTCTCACGGCAAAGCCTCTGGCAAAATATGTCATGCCAGTGTTGCACGAAAAAGAACATTATAGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGATTACATCAGAAATTGTATGAGAGGATTCGGTCGGCAAAGGTTAACTCGTCCTCTGATGAAAGGAAATGGGGGACTACAAATGATACTAGCTCTACTGAACAATATGGCAGGTTCTTGAATTCTCTTTATGACTTCCTGGACGGTTCTTCTGATAATACGAAGTTTGAGGATGACTGTCGAGCTATTGTTGGAACTCAGTCATATGTTTTGTTCACAATAGACAAGCTAATATATAAACTTGTTAAACATCTTCAAGCCGTTGCAGATGATGAGATGGATAACAAGCTTCTTCAATTATATGCACATGAGAAATCAAGAAAACCTGGAAGATTTTTTGATACAGTCTATCATGACAATGCTCGCATTCTTCTTCACGATGACAATATATATCGAGTTGAATGTTCACCTGCACCTACTCGTTTGTCTATTCAACTGATGGACTACGGTCGTGATAAGCCCGAAGTGACTGCTGTGTCAATTGACCCAAAATTTTCAGCATATCTGCACAATGACTTCCTAGCTGTTGTCCCTGACCAAAATAAGAAGTCTGGAATTTTCTTGAATAGGAATAAACGCAAATATGTCGTTGGCGATGAATTTACCAGCCAGGCCATGGATGGAGTCGACGTTTTCAATGGCTTGGAGTGCAAGATAGCTTGCAGTTCGTCTAAGGTAGTTTCATATGTTTTAGATACCGAAGACTTTTTAATACGAACAAGAAGCAGAAGGAGAACCTTGCATCATAACAATTCATTCCATGAAAAGGCCAAGCCTTCAGAGAAATGTTCAAGCAGAGCTCAACGGTATCACCAGTTGTTTACAATCATATGA 4299 0.4015 MVEEFLEKTLLWKGTLQFVHFTITIKRPMVSSRGEASGQPQVTIGNAVQKLTHDDAVKYLNTVKDAFHDKPKKYADFLKVMKDFKAQRIDTAGVIARVKELFKGHRNLILGFNTFLPKGYEITLPLEDEQPQQKKPVEFVEAINFVGKIKSRFQGDDRVYKSFLDILNMYRKETKTISEVYLEVAALFRDHEDLLEEFTHFLPDNSVSASTHYTSARNSILRDKSSAMPTIRPVHVEKKERTMASHGECDLSVEHPDQELDKSLVRADKDQKRRAEKEKDRREERDRRERERDDRDYDVDCNRDSLSHKRKSGRRTDDSGAEPFHDEDENFDLRPMSSTCEDKSSLKSMCSQVVAFLEKVKEKLRTPEVYQEFLKCLHIYSREIITRQELQSLVGDLLGKFPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLRNEGHGLKALKVEERDRDRDRDKVEGVKERDRECRERDKSTAAANKDVFVPKMSPYATKDKYLAKPINELDLSNCEQCTPSYRLLPKNYPIQIPSQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQFEDILFRCEDDRYELDMLIESVNVAIKRVEELLEKINTNIIKGDSPIRIEEHFTALNLRLIERLYGDHGLDAMDWLRKDASRFLPVILNRLRQKHVECVRMSVACKPEWAKVHAANHHKSLDHRSFYFKQQDKKSLSNKALLTEIKEISEKKWKDDVLLAIAAGNRRPLLPNLEFEYPDPEIHEDLYQLIKYSCGELCTTEQMDEVLKIWTTFLEPMLGVPSRPQSCEDTDDIVKAKSNSSRSGTSNDSNGNDSHGFGATPNNLNTNENRDESIPLAQSNSFKEWLANGDSGVKESSHLDSDRTSYKIETLGSNTQQGKIHMIASIPDEVSRINKQDHPIEKLASANISVASGMEQNGRTNIDNTSGLTSPPSGPGNVSGEGGLGLPPSKLADSTKPVTSSNGAITEGTKVHRPKDESVGHFKSDREEGELSPNGDFEEDNFAVYGEAGLEGVIEGKDSSTSRQYQSRHGEEVCGEAGGRNDLDDEGEESPHRSSEDSDHALENGDVSGSESADGDDFTREEKECGDQEHNNKAESEGEAEETADGNDVEGDSSLLPISEHFLLTAKPLAKYVMPVLHEKEHYRVFYGNDSFYVLFRLHQKLYERIRSAKVNSSSDERKWGTTNDTSSTEQYGRFLNSLYDFLDGSSDNTKFEDDCRAIVGTQSYVLFTIDKLIYKLVKHLQAVADDEMDNKLLQLYAHEKSRKPGRFFDTVYHDNARILLHDDNIYRVECSPAPTRLSIQLMDYGRDKPEVTAVSIDPKFSAYLHNDFLAVVPDQNKKSGIFLNRNKRKYVVGDEFTSQAMDGVDVFNGLECKIACSSSKVVSYVLDTEDFLIRTRSRRRTLHHNNSFHEKAKPSEKCSSRAQRYHQLFTII 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04190 1432 ProSiteProfiles PAH domain profile. 346 415 IPR003822 GO:0006355
Aip03g04190 1432 MobiDBLite consensus disorder prediction 796 830 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 915 998 - -
Aip03g04190 1432 Coils Coil 578 598 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 1015 1112 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 444 470 - -
Aip03g04190 1432 SUPERFAMILY PAH2 domain 132 204 IPR036600 GO:0006355
Aip03g04190 1432 Pfam Sin3 family co-repressor 507 598 IPR013194 -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 1021 1063 - -
Aip03g04190 1432 Gene3D Paired amphipathic helix 55 117 IPR036600 GO:0006355
Aip03g04190 1432 SUPERFAMILY PAH2 domain 350 415 IPR036600 GO:0006355
Aip03g04190 1432 Gene3D Paired amphipathic helix 344 417 IPR036600 GO:0006355
Aip03g04190 1432 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 23 1403 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 915 935 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 1072 1099 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 224 342 - -
Aip03g04190 1432 Coils Coil 265 294 - -
Aip03g04190 1432 ProSiteProfiles PAH domain profile. 135 205 IPR003822 GO:0006355
Aip03g04190 1432 MobiDBLite consensus disorder prediction 968 990 - -
Aip03g04190 1432 Pfam C-terminal domain of Sin3a protein 1145 1392 IPR031693 -
Aip03g04190 1432 Pfam Paired amphipathic helix repeat 159 202 IPR003822 GO:0006355
Aip03g04190 1432 Pfam Paired amphipathic helix repeat 368 412 IPR003822 GO:0006355
Aip03g04190 1432 Pfam Paired amphipathic helix repeat 73 116 IPR003822 GO:0006355
Aip03g04190 1432 MobiDBLite consensus disorder prediction 952 966 - -
Aip03g04190 1432 ProSiteProfiles PAH domain profile. 49 119 IPR003822 GO:0006355
Aip03g04190 1432 SMART hdac_interact2seq4b 505 605 IPR013194 -
Aip03g04190 1432 PANTHER SIN3B-RELATED 23 1403 IPR039774 GO:0003714
Aip03g04190 1432 SUPERFAMILY PAH2 domain 49 118 IPR036600 GO:0006355
Aip03g04190 1432 MobiDBLite consensus disorder prediction 233 336 - -
Aip03g04190 1432 MobiDBLite consensus disorder prediction 780 830 - -
Aip03g04190 1432 Gene3D Paired amphipathic helix 133 206 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04190 Aip-Chr3 125921228 125955562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04190 13 131 WRKY Transcription Factor Family AT4G12020 46.218 9.39e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04190 Sin3a_C 1.5e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04190 K11644 - gmx:100781798 1939.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04190 03 125921228 125955562 Aip03g04190 03 125921228 125955562 ECH