LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04181	ATGATTCTAACGCGTTCCGCTTTGAATTTGATGCTCCATCTCCACAATCCCCAAACTCCCTTCCAATTCTTCAACCACCGTGCTTCCACTTTTCTTCTCCGCACCACCACCACTTCTCTCCTCAAAGCTCGCTTCTTTTCTTCAACCTCTGTAGCAGCAACAGCAGCGTCATTATCTGCGCAAAGTTCAGAGGGTAGAGACACTTTCTTTGCTGAGGATAACGTTTCGTGGAGCTCACTTGGTCTCTCTGATACCCTTTCTCGTGCTCTCTCTAACATTGGCCTCAGTAGACCCTCTCTCGTTCAGGCTTCTTCAATACCATCTGTTCTTTCTGGAAAGGATGTGATTATTGCAGCAGAGACCGGAAGTGGTAAAACATACAGTTATCTAGTTCCTCTATTTGATAAGCTAAGGGACACCCATGAACATTCTCAACACAATGTATCTGATCAAGAAGTTCCTCTGCCCCAAAAGAATGTTTTCCTCATTCTTTGTCCAAATGTACAGCTTTGCGAGCAGGTAGTCAGGATGGCTAATAGTCTATGTGGAGACAATGGTGAACCAATTGTTAGCGTGGCAGCAATTTGTGGCAGACAGGGATGGCCAATTCGTGAGCCTGATATAATTGTGACAACACCTGCTGCCCTTCTGAATTATGTAGACACTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTCTTCGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGCTAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCGTGCAAAAGAATCAAAAGGAGATTTACCAGAGAAACCAGAATCTTCCTTGTCAGCAGATGATGCTTTGGAAGATGAAGAGGAACATCCTCCTGAGGCCATGTCAGAAGAGGATGATGATACTCATGAGGATATTGTTGATACTAATAATGAAGCTAAATCTGTTAAACAAAAAGACTGGAGGAGGGTCAGGAAAACTTATAAGCGCAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCTGTTAATGGAAAGAAAACAGCTGGAGCAATGTTGAAACATATGTTTCCTGATGCTACGTGGGTTAGCGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAAAGATGGGTTGAAGTTACGGTCGAGTCGCAGGTTGATCAACTCATAAAGGCTGTGCGTCATCCCTTCAAGCCAACAGATCTGGATAATGCTGGTGGCATCCAGAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGCTCCGATGTGGGATTGAGTGTTTACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCGCAGGCCTTGGTTGAATTTGAAGAGAAAGGTGGTGTTCTTGTATGCACCGATGCAGCTGCTCGTGGTGTGGATATTCCTAATGTATTACATGTTATTCAGGCAGATTTTGCTACTTCTGCCGTGGACTTTCTGCACAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTCGGACTCGTTACTAGCATGTATACTGAATCCAACAAGGAGCTTGTTCGTGCCGTTCGTCGAGCTGGAGAACTTGCTCAACCTGTGGAGGCGGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAACTCAAAAAGAGCGGTGCTAGCAAAGTCAGAGATTCAGAAACTATTAAAGAGAGTGTCGTAGCATGA	1731	0.4454	MILTRSALNLMLHLHNPQTPFQFFNHRASTFLLRTTTTSLLKARFFSSTSVAATAASLSAQSSEGRDTFFAEDNVSWSSLGLSDTLSRALSNIGLSRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLFDKLRDTHEHSQHNVSDQEVPLPQKNVFLILCPNVQLCEQVVRMANSLCGDNGEPIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDTDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLLNLLRFDEKLLSRAKESKGDLPEKPESSLSADDALEDEEEHPPEAMSEEDDDTHEDIVDTNNEAKSVKQKDWRRVRKTYKRSKQYIFVAATLPVNGKKTAGAMLKHMFPDATWVSGNYLHCHNPRLEQRWVEVTVESQVDQLIKAVRHPFKPTDLDNAGGIQRTMVFANTVEAVEAVAKILLRCGIECLRYHKNCTLEERAQALVEFEEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNKELVRAVRRAGELAQPVEAAFSRKRSFRNKLKKSGASKVRDSETIKESVVA	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04181	576	CDD	DEADc	86	268	-	-
	Aip03g04181	576	Pfam	DEAD/DEAH box helicase	101	265	IPR011545	GO:0003676\|GO:0005524
	Aip03g04181	576	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 22	44	551	-	-
	Aip03g04181	576	MobiDBLite	consensus disorder prediction	289	314	-	-
	Aip03g04181	576	Gene3D	-	47	365	IPR027417	-
	Aip03g04181	576	Gene3D	-	384	576	IPR027417	-
	Aip03g04181	576	SMART	ultradead3	94	386	IPR014001	-
	Aip03g04181	576	CDD	SF2_C_DEAD	383	521	-	-
	Aip03g04181	576	Pfam	Helicase conserved C-terminal domain	419	512	IPR001650	-
	Aip03g04181	576	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	106	367	IPR014001	-
	Aip03g04181	576	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	44	551	-	-
	Aip03g04181	576	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	106	524	IPR027417	-
	Aip03g04181	576	MobiDBLite	consensus disorder prediction	556	576	-	-
	Aip03g04181	576	MobiDBLite	consensus disorder prediction	272	328	-	-
	Aip03g04181	576	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	395	560	IPR001650	-
	Aip03g04181	576	MobiDBLite	consensus disorder prediction	272	288	-	-
	Aip03g04181	576	SMART	helicmild6	432	512	IPR001650	-
	Aip03g04181	576	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	75	103	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04181	Aip-Chr3	125780571	125785486	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04181	326	538	Eukaryotic Initiation Factors Gene Family	AT5G11200	27.869	6.24e-14	72.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g04181	-		-	gmx:100789323	840.491