Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04169 ATGGATGTGTATTTTGATATCCAAAGAGGGAGAACCTTCTGCATTGAAATTGGATACTTCGACAGTGTTCTTGAGATCAAAGAAAAGGTGCACAAGTATCAAGGCATTCCCATTGCAAAACAAACTCTCATTTTCAACGGCCATATTCTCCAAGACGATGGCGACGTTTGGAAGTACGACATTCTTAACAATTCGCACATCCAACTCGTCGTCGCGGACTCAGACAAGTCGCCCATTGCTGGTATGATCAAGATCGAAGATGTACCAGCAATAATGAGCGACTTGTCTCCCGCTGTCATCAAGGTCCATCTCAATTTGAAAATCGCTTCATTTAAAGCACACGTTCCCGTGGAAATGAACGTAACCGACACCGTTTTGAAACTGAAAGAAAAGATTCAAGAAATGGAAGGTGTATCGACAAACAAGATTCTCTTACATGCAACAGGAACAGAATTACACGATCATCAGCTACTGAAAGATTGTGACATTTCAGACAAGTCTGAAATTGACGTGAGTCTGAGACCATCGCCTACAACTTCAGCTGTGGCTAGTAGCCGCGGCAGCGGTAGTGGCAGTGCTTCGAAGAAGCTCAAGCTAATGGTGTTGCCAAATACAGAGACCAATAAGATACCTGTGGAAGTGAATGCATCGGATAACGTTAGAGAGTTAAGGAAAGAATTGCAAAAGTTGCATCAGAATTTGCAATTTCATTTACCACAAGAAGGTTATTTCTTCATTTACAAGCAGAATGTTATGGATGACAATATGTCTTTTCGATCGCACCATGTTGTTCAAGGTGATACCATTGAAATTTTCAATGGTAGTGTCACCGGTGGTTCGTGCCTTGGATGGGAACTATGGTATTTTTCCCTGGTTTTCCCATTTGTTAACAATCTTAAGAGAGTTGTTCTTATCTTAACAGAGAAGGAGGGACTTTTTAGTTTGACATGTTGCAATGTAATGTTTGTTTCTCTCTCATTTTCTTTAATCAACTAG 996 0.4076 MDVYFDIQRGRTFCIEIGYFDSVLEIKEKVHKYQGIPIAKQTLIFNGHILQDDGDVWKYDILNNSHIQLVVADSDKSPIAGMIKIEDVPAIMSDLSPAVIKVHLNLKIASFKAHVPVEMNVTDTVLKLKEKIQEMEGVSTNKILLHATGTELHDHQLLKDCDISDKSEIDVSLRPSPTTSAVASSRGSGSGSASKKLKLMVLPNTETNKIPVEVNASDNVRELRKELQKLHQNLQFHLPQEGYFFIYKQNVMDDNMSFRSHHVVQGDTIEIFNGSVTGGSCLGWELWYFSLVFPFVNNLKRVVLILTEKEGLFSLTCCNVMFVSLSFSLIN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04169 331 CDD Ubl_ubiquitin_like 116 171 - -
Aip03g04169 331 SMART ubq_7 199 274 IPR000626 GO:0005515
Aip03g04169 331 SMART ubq_7 1 72 IPR000626 GO:0005515
Aip03g04169 331 SMART ubq_7 104 174 IPR000626 GO:0005515
Aip03g04169 331 MobiDBLite consensus disorder prediction 173 192 - -
Aip03g04169 331 CDD Ubl_ubiquitin_like 9 70 - -
Aip03g04169 331 CDD Ubl_ubiquitin_like 209 272 - -
Aip03g04169 331 Gene3D - 99 172 - -
Aip03g04169 331 Gene3D - 1 73 - -
Aip03g04169 331 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Aip03g04169 331 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 279 - -
Aip03g04169 331 ProSiteProfiles Ubiquitin domain profile. 102 174 IPR000626 GO:0005515
Aip03g04169 331 SUPERFAMILY Ubiquitin-like 89 173 IPR029071 -
Aip03g04169 331 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Aip03g04169 331 Gene3D - 180 275 - -
Aip03g04169 331 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 279 - -
Aip03g04169 331 ProSiteProfiles Ubiquitin domain profile. 197 278 IPR000626 GO:0005515
Aip03g04169 331 Pfam Ubiquitin family 114 175 IPR000626 GO:0005515
Aip03g04169 331 Pfam Ubiquitin family 205 270 IPR000626 GO:0005515
Aip03g04169 331 Pfam Ubiquitin family 7 71 IPR000626 GO:0005515
Aip03g04169 331 SUPERFAMILY Ubiquitin-like 192 272 IPR029071 -
Aip03g04169 331 Coils Coil 213 233 - -
Aip03g04169 331 SUPERFAMILY Ubiquitin-like 2 71 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04169 Aip-Chr3 125641915 125642910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04169 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.986 2.56e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04169 - - aip:107633828 639.417