Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04167 ATGATCCCAATCAAAGTCGACGATATTTTTGTAAAAGAAAACATGAAGACCAAGGATTGGGTCATCGAAGCGGATCTCAAGGAATCAAAAGTGCCACCACTATGCAGGACCTCATGCGTGCTTGCGAAGAAAAACAGAGAACCTGATTTAATTCCTTTTTGTGCTTCCCCGAATTCCTTCAAGATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATTACTCTCGAGGTCGAGAGTTCTGACACCATCGATAATGTGAAGGCGAAAATTCAAGATAAGGAAGGGATCCCTCCCGACCAGCAGCGTCTAATCTTCGCCGGAAAACAGCTGGAGGATGGCCGTACCCTTGCCGACTACAACATCCAGAAGGAGTCAACCCTTCACCTTGTCCTCCGTCTTCGCGGTGGCATGCAGATATTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAAAGTTCCGACACCATCGACAACGTGAAGGCCAAAATTCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGAGGTTGATCTTCGCGGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTCCGACTGCGTGGTGGAATGCAGATTTTCGTCAAGACCCTTACCGGAAAGACAATCACCCTGGAAGTTGAGAGTTCGGACACCATCGATAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGCACCTTGGCTGATTACAACATCCAAAAGGAATCCACTCTCCACCTTGTGTTGCGTCTCCGTGGTGGGATGCAGATATTTGTCAAGACTTTGACAGGAAAGACCATCACTCTTGAGGTTGAGAGCTCGGACACCATTGACAATGTGAAAGCCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAGGACGGCCGCACCTTAGCCGATTACAACATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTTCGTGGTGGATTTTAA 1101 0.5032 MIPIKVDDIFVKENMKTKDWVIEADLKESKVPPLCRTSCVLAKKNREPDLIPFCASPNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04167 366 PRINTS Ubiquitin signature 72 92 IPR019956 -
Aip03g04167 366 PRINTS Ubiquitin signature 114 135 IPR019956 -
Aip03g04167 366 PRINTS Ubiquitin signature 93 113 IPR019956 -
Aip03g04167 366 ProSiteProfiles Ubiquitin domain profile. 138 213 IPR000626 GO:0005515
Aip03g04167 366 SUPERFAMILY Ubiquitin-like 58 137 IPR029071 -
Aip03g04167 366 ProSitePatterns Ubiquitin domain signature. 240 265 IPR019954 -
Aip03g04167 366 ProSiteProfiles Ubiquitin domain profile. 62 137 IPR000626 GO:0005515
Aip03g04167 366 PANTHER UBIQUITIN 13 61 268 - -
Aip03g04167 366 PANTHER UBIQUITIN 13 137 342 - -
Aip03g04167 366 ProSitePatterns Ubiquitin domain signature. 316 341 IPR019954 -
Aip03g04167 366 ProSiteProfiles Ubiquitin domain profile. 290 365 IPR000626 GO:0005515
Aip03g04167 366 ProSiteProfiles Ubiquitin domain profile. 214 289 IPR000626 GO:0005515
Aip03g04167 366 PANTHER UBIQUITIN 137 342 - -
Aip03g04167 366 PANTHER UBIQUITIN 266 365 - -
Aip03g04167 366 SUPERFAMILY Ubiquitin-like 289 365 IPR029071 -
Aip03g04167 366 Pfam Ubiquitin family 292 363 IPR000626 GO:0005515
Aip03g04167 366 Pfam Ubiquitin family 64 135 IPR000626 GO:0005515
Aip03g04167 366 Pfam Ubiquitin family 216 287 IPR000626 GO:0005515
Aip03g04167 366 Pfam Ubiquitin family 140 211 IPR000626 GO:0005515
Aip03g04167 366 ProSitePatterns Ubiquitin domain signature. 88 113 IPR019954 -
Aip03g04167 366 CDD Ubl_ubiquitin 214 289 - -
Aip03g04167 366 Gene3D - 214 289 - -
Aip03g04167 366 Gene3D - 56 137 - -
Aip03g04167 366 Gene3D - 138 213 - -
Aip03g04167 366 Gene3D - 290 366 - -
Aip03g04167 366 SUPERFAMILY Ubiquitin-like 213 289 IPR029071 -
Aip03g04167 366 SUPERFAMILY Ubiquitin-like 137 213 IPR029071 -
Aip03g04167 366 CDD Ubl_ubiquitin 290 365 - -
Aip03g04167 366 CDD Ubl_ubiquitin 62 137 - -
Aip03g04167 366 PANTHER UBIQUITIN 61 268 - -
Aip03g04167 366 SMART ubq_7 62 133 IPR000626 GO:0005515
Aip03g04167 366 SMART ubq_7 138 209 IPR000626 GO:0005515
Aip03g04167 366 SMART ubq_7 214 285 IPR000626 GO:0005515
Aip03g04167 366 SMART ubq_7 290 361 IPR000626 GO:0005515
Aip03g04167 366 ProSitePatterns Ubiquitin domain signature. 164 189 IPR019954 -
Aip03g04167 366 CDD Ubl_ubiquitin 138 213 - -
Aip03g04167 366 PANTHER UBIQUITIN 13 266 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04167 Aip-Chr3 125634827 125638015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04167 290 366 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.08e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04167 - K08770 han:110936586 594.734