Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04158 ATGGCTGGTGATGAAGTAGGTAGTAGCTCTGAGTGGAGCTTTGAGCAGGATAAAGCATTTGAGAATGCCTTGGGTACTTACCCTGAGGACGATCTGGATCGATGGGAGAAGATTGCTGCCGATGTAACTGGGAAGACTTTGGAAGAGGTTAAACAACACTATGAGCTTCTGGTTGATGATGTCAACTTAATTGAATCTGGGCGTGTGACTCTACCGGCTTATAATTCTACTTCAGAAGGCTCAACAGGCAATGCTAGTGATGAAGGAGCTGGCAAGAAGGGTGGCCAACCTTGGAATTCAAACAGCGAGTCTAATAATGGATCTAAGGCTTCAAGATCAGATCAGGAACGGCGCAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTATTTCTTCTTGGATTGGAGAAGTATGGAAAGGGTGACTGGCGAAGTATATCGAGGAATTTTGTGGTGACAAGAACTCCTACACAAGTAGCAAGCCACGCCCAAAAATATTTCATTCGTTTGAACTCGATGAACAAAGATCGAAGGCGATCAAGCATACACGATATCACCAGTGTGAACAATGGAGACGTGTCGGCACCTCAAGGACCAATCACCGGTCAAACGAATGGTTCAGCTGGAAATTCCACGGGAAAGTCACCAAAACAAGGCCCTCCAACCCCAACCGGTCCTCCAACTGTAGGACTGTTTGGTGCTCCGACCATTGGACAACCGATAGGAGGAGGACCCCTTGTGTCTGCAGTTGGCACGCCAGTGAATGCACACATGGCTTATGGTGTCCGAGCTCCAGTTCCCGGGGCTCCGATGAACATGGGTGCTGTGGCATACCCCATGCCCCCAACATCTCATAGGTGA 861 0.4855 MAGDEVGSSSEWSFEQDKAFENALGTYPEDDLDRWEKIAADVTGKTLEEVKQHYELLVDDVNLIESGRVTLPAYNSTSEGSTGNASDEGAGKKGGQPWNSNSESNNGSKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAGNSTGKSPKQGPPTPTGPPTVGLFGAPTIGQPIGGGPLVSAVGTPVNAHMAYGVRAPVPGAPMNMGAVAYPMPPTSHR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04158 286 CDD SANT 11 58 IPR001005 -
Aip03g04158 286 Gene3D - 10 57 - -
Aip03g04158 286 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Aip03g04158 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Aip03g04158 286 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Aip03g04158 286 PANTHER TRANSCRIPTION FACTOR KUA1 7 275 - -
Aip03g04158 286 MobiDBLite consensus disorder prediction 73 120 - -
Aip03g04158 286 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Aip03g04158 286 MobiDBLite consensus disorder prediction 95 109 - -
Aip03g04158 286 MobiDBLite consensus disorder prediction 184 218 - -
Aip03g04158 286 CDD SANT 122 167 IPR001005 -
Aip03g04158 286 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 275 - -
Aip03g04158 286 MobiDBLite consensus disorder prediction 177 237 - -
Aip03g04158 286 Gene3D - 121 173 - -
Aip03g04158 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Aip03g04158 286 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Aip03g04158 286 SMART sant 8 60 IPR001005 -
Aip03g04158 286 SMART sant 119 169 IPR001005 -
Aip03g04158 286 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Aip03g04158 286 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04158 Aip-Chr3 125529130 125531814 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g04158 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04158 - - ccaj:109792793 450.669