Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04154 ATGAACCCTGCAGTGATTTTCATCATAGTGATCTTAGCTATTGTGTTCTTGATCTCTGGTATCATTCAATTGGTTGTTAGATTCCTTATGAGGCAAAGGTCCTCTTCTTCGTCAATTATACAATCAAATAGGTTCCCTGACATGTCTGAACCTGATGCATACCAGAGACAGTTACAGCAACTCTTCCATCTCCATGATTCAGGCTTGGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCTACTACAGAGAGATCATAGGTTTGAAGGAACCATTTGATTGCGCAGTTTGCTTATGTCAATTCTCAGAACAAGACATGCTGAGATTGCTTCCACTTTGTAACCATGCTTTTCACATTGACTGCATAGACACATGGCTCATGTCTAATTCAACTTGTCCCCTTTGTAGAGGGAGCCTCTATGATCCAGGGTTTGCATTTGACAACCCAGTTTATGAATTTGAGGGTCCAATAAGGGAAGATGGGGTTTCAGGGAGTGGTGTTGGTGTTGGTGTTGGTGAGGCTGGTTCTGCTAATAACAAACATGGAGAAAGTCACATAATGAGTGGGAAAAGGGTGTTTTCTGTTAGGCTTGGGAAATTCAGGAGCTCAAATAATGGTGAAGGTGTGGTCATGGGAAGAGGTGAAGGAGAGAGTAGTAGTAGCACAAGTAATTTTGATGTGAGGAGGTGCTTCTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTATGCCCTGACACCAGTGGCAGTATGAGAAAATTGAAAGGAAGATTAGCTCCACAGTATGGAAATTCTTCTTCCATTGATGGGGATATTGAGGGGGAAAAGATCAACATTGCTAGAAAAGGTGAGAGCTTTTCTGTTTCAAAGATTTGGCTATGGTCTAGGAAGGATAAGGTATCAAATTCCTCACCAGAAATTCATTTGGGTAATTCTCATGTCACTGCAACTTTGCATGGATGA 981 0.419 MNPAVIFIIVILAIVFLISGIIQLVVRFLMRQRSSSSSIIQSNRFPDMSEPDAYQRQLQQLFHLHDSGLDQAFIDALPVFYYREIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLMSNSTCPLCRGSLYDPGFAFDNPVYEFEGPIREDGVSGSGVGVGVGEAGSANNKHGESHIMSGKRVFSVRLGKFRSSNNGEGVVMGRGEGESSSSTSNFDVRRCFSMGSFQYVVADSDLQVALCPDTSGSMRKLKGRLAPQYGNSSSIDGDIEGEKINIARKGESFSVSKIWLWSRKDKVSNSSPEIHLGNSHVTATLHG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04154 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Aip03g04154 326 SMART ring_2 94 135 IPR001841 -
Aip03g04154 326 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Aip03g04154 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 317 - -
Aip03g04154 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 317 - -
Aip03g04154 326 SUPERFAMILY RING/U-box 73 142 - -
Aip03g04154 326 CDD RING-H2_PA-TM-RING 93 136 - -
Aip03g04154 326 Pfam Ring finger domain 93 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04154 Aip-Chr3 125455805 125457500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04154 20 310 C3H Transcription Factor Family AT2G18650 38.245 1.05e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04154 - - gmx:100818135 430.639